Resource

Id Histone_ChIP-seq/ENCSR664KWYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR664KWY [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR664KWY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_NTR_0000856/
  • biosample_summary: Homo sapiens mesendoderm originated from H1
  • date_created: 2015-10-01T07:17:08.174822+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR664KWY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR664KWY float

Histone_ChIP-seq_ENCSR664KWY
Histone_ChIP-seq ENCSR664KWY [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR664KWY [1.8, 9.91]
n
26,498,009
mean
3.75
sd
0.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 264980090.82% 82371
chr1 3000931 1.21% 8877
chr2 2165113 0.89% 6798
chr3 1871814 0.94% 5913
chr4 1137636 0.60% 3798
chr5 1597349 0.88% 5064
chr6 1485254 0.87% 4724
chr7 1154800 0.72% 3797
chr8 1254711 0.86% 3958
chr9 1125077 0.81% 3501
chr10 1416529 1.06% 4305
chr11 1610679 1.19% 4899
chr12 1386098 1.04% 4212
chr13 652384 0.57% 2186
chr14 903328 0.84% 2771
chr15 1000771 0.98% 3007
chr16 806953 0.89% 2507
chr17 1151992 1.38% 3415
chr18 721684 0.90% 2282
chr19 476982 0.81% 1511
chr20 692218 1.07% 2099
chr21 244384 0.52% 763
chr22 521008 1.03% 1547
chrX 116179 0.07% 425
chrY 4135 0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82371 135 2859 321.69 267
global segment-length histogram

Files

Filename Size md5
ENCFF070HOL.bed.gz 1.57 MB 7bbbb6a1cfeaa699ed98ca43aa8cddfc
ENCFF070HOL.tabix.bed.gz 832.43 KB c5d0cdf0783787df3af961eeefa17229
ENCFF070HOL.tabix.bed.gz.tbi 299.2 KB 576dcb0cf6adeaed57ad103baabba9a3
genomic_resource.yaml 2.17 KB 1752bdadbff38e1b8536ad0320a88983
statistics/