Resource
| Id | Histone_ChIP-seq/ENCSR661BMA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR661BMA [biosample_summary="Homo sapiens SK-N-SH" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN691JDA|/analyses/ENCAN691JDA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF164MOZ|/files/ENCFF164MOZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 33300036 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF017HHL|/files/ENCFF017HHL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 43608527 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR661BMA | float |
Histone_ChIP-seq_ENCSR661BMA |
Histone_ChIP-seq ENCSR661BMA [biosample_summary="Homo sapiens SK-N-SH" and target="H3K4me1"]
|
 |
[1.46, 8.45] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 67045506 | 2.08% | 77888 |
| chr1 | 6744961 | 2.71% | 7674 |
| chr2 | 6235055 | 2.57% | 7088 |
| chr3 | 4640402 | 2.34% | 5483 |
| chr4 | 3348086 | 1.76% | 4058 |
| chr5 | 4033100 | 2.22% | 4714 |
| chr6 | 3653522 | 2.14% | 4352 |
| chr7 | 3832031 | 2.40% | 4375 |
| chr8 | 3061650 | 2.11% | 3569 |
| chr9 | 2842056 | 2.05% | 3314 |
| chr10 | 3546579 | 2.65% | 4063 |
| chr11 | 4387186 | 3.25% | 4769 |
| chr12 | 3657509 | 2.74% | 4190 |
| chr13 | 1893197 | 1.66% | 2321 |
| chr14 | 2157602 | 2.02% | 2478 |
| chr15 | 2369242 | 2.32% | 2766 |
| chr16 | 1674811 | 1.85% | 2025 |
| chr17 | 2853127 | 3.43% | 3139 |
| chr18 | 1349823 | 1.68% | 1657 |
| chr19 | 1129005 | 1.93% | 1392 |
| chr20 | 1543185 | 2.39% | 1834 |
| chr21 | 588250 | 1.26% | 741 |
| chr22 | 885782 | 1.74% | 1024 |
| chrX | 619345 | 0.40% | 862 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 77888 | 215 | 11821 | 860.79 | 708 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF864MVD.bed.gz | 1.79 MB | 285c53ebd2250a8bf8483598181787ea |
| ENCFF864MVD.tabix.bed.gz | 834.97 KB | a8b1be8c0ee9af0979933f764ff1309b |
| ENCFF864MVD.tabix.bed.gz.tbi | 264.89 KB | d511097f0dcab0d07e405a1869aa5c1e |
| genomic_resource.yaml | 2.38 KB | 18e52f58f4a59b0e0192be8405db8b6d |
| statistics/ |