Resource

Id Histone_ChIP-seq/ENCSR660RYCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR660RYC [biosample_summary="Homo sapiens chorionic villus tissue female embryo (40 weeks)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR660RYC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:16:52.011525+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR660RYC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR660RYC float

Histone_ChIP-seq_ENCSR660RYC
Histone_ChIP-seq ENCSR660RYC [biosample_summary="Homo sapiens chorionic villus tissue female embryo (40 weeks)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR660RYC [1.83, 22.1]
n
6,920,242
mean
3.75
sd
0.774

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 69202420.22% 27207
chr1 220425 0.09% 922
chr2 486151 0.20% 1987
chr3 366818 0.18% 1486
chr4 551006 0.29% 2212
chr5 478144 0.26% 1865
chr6 273344 0.16% 1127
chr7 455972 0.29% 1719
chr8 465435 0.32% 1809
chr9 222585 0.16% 877
chr10 267363 0.20% 1085
chr11 329760 0.24% 1309
chr12 310227 0.23% 1202
chr13 473722 0.41% 1857
chr14 245630 0.23% 975
chr15 131244 0.13% 472
chr16 210802 0.23% 820
chr17 109817 0.13% 429
chr18 240491 0.30% 960
chr19 270749 0.46% 898
chr20 83374 0.13% 357
chr21 255197 0.55% 893
chr22 74557 0.15% 272
chrX 397292 0.25% 1673
chrY 137 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27207 135 1653 254.36 222
global segment-length histogram

Files

Filename Size md5
ENCFF548TZX.bed.gz 437.69 KB 88981a7e2693681462dc63118e79f86d
ENCFF548TZX.tabix.bed.gz 240.09 KB 60a6d7af90f4dbaa61dcd7ed780f7029
ENCFF548TZX.tabix.bed.gz.tbi 169.12 KB 58bf64701f7a4e9a5a21dd55787f366c
genomic_resource.yaml 1.53 KB 6f8113a9229016c4815eda4a2a6c3270
statistics/