Resource

Id Histone_ChIP-seq/ENCSR659MYScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR659MYS [biosample_summary="Homo sapiens ovary tissue female adult (30 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR659MYS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (30 years)
  • date_created: 2015-10-01T07:17:03.031666+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR659MYS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment: Several of the old analyses and files on this dataset have been revoked due to processing with a contaminated control. The new analyses and files submitted in Feb 2023 are the corrected version.
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR659MYS float

Histone_ChIP-seq_ENCSR659MYS
Histone_ChIP-seq ENCSR659MYS [biosample_summary="Homo sapiens ovary tissue female adult (30 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR659MYS [1.83, 24.3]
n
42,887,518
mean
5.35
sd
1.79

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 428875181.33% 116241
chr1 4007942 1.61% 11113
chr2 3067193 1.27% 8911
chr3 2510799 1.27% 7127
chr4 1659490 0.87% 4917
chr5 1842214 1.01% 5357
chr6 1793931 1.05% 5294
chr7 2082502 1.31% 5753
chr8 1356535 0.93% 3955
chr9 2028616 1.47% 5353
chr10 1716495 1.28% 4993
chr11 2202821 1.63% 5901
chr12 2360385 1.77% 6158
chr13 774010 0.68% 2360
chr14 1340202 1.25% 3893
chr15 1466038 1.44% 4073
chr16 2147012 2.38% 5303
chr17 2386405 2.87% 6246
chr18 644581 0.80% 1939
chr19 3806926 6.49% 7937
chr20 1334978 2.07% 3518
chr21 502566 1.08% 1330
chr22 1287336 2.53% 3132
chrX 568541 0.36% 1678
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 116241 110 10058 368.95 294
global segment-length histogram

Files

Filename Size md5
ENCFF558KMA.bed.gz 2.24 MB b69f5f070ea3fe329f3e2da8add3f0b7
ENCFF558KMA.tabix.bed.gz 1.09 MB 415002fa840868b2519492332c7c9561
ENCFF558KMA.tabix.bed.gz.tbi 207.94 KB 0fd7ee00569b9b3cae0ef81d43fabeed
genomic_resource.yaml 1.9 KB f84a9fb18110d37721d29a8288b56eee
statistics/