Resource
| Id | Histone_ChIP-seq/ENCSR659MOZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR659MOZ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue male adult (90 or above years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (90 or above years) with Alzheimer's disease output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN806WAN|/analyses/ENCAN806WAN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF733KAV|/files/ENCFF733KAV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 31440601 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR659MOZ | float |
Histone_ChIP-seq_ENCSR659MOZ |
Histone_ChIP-seq ENCSR659MOZ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue male adult (90 or above years)" and target="H3K27me3"]
|
 |
[1.83, 14.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38135889 | 1.19% | 48456 |
| chr1 | 3095642 | 1.24% | 4088 |
| chr2 | 2875874 | 1.19% | 3743 |
| chr3 | 1167139 | 0.59% | 1651 |
| chr4 | 1604319 | 0.84% | 2005 |
| chr5 | 1982531 | 1.09% | 2424 |
| chr6 | 2577457 | 1.51% | 2822 |
| chr7 | 1990533 | 1.25% | 2323 |
| chr8 | 1659051 | 1.14% | 2283 |
| chr9 | 1319561 | 0.95% | 1642 |
| chr10 | 2285388 | 1.71% | 2989 |
| chr11 | 1459116 | 1.08% | 1969 |
| chr12 | 1800548 | 1.35% | 2187 |
| chr13 | 936586 | 0.82% | 1224 |
| chr14 | 1807913 | 1.69% | 2262 |
| chr15 | 1392195 | 1.37% | 1933 |
| chr16 | 1799557 | 1.99% | 2427 |
| chr17 | 2114490 | 2.54% | 2340 |
| chr18 | 869092 | 1.08% | 1230 |
| chr19 | 1928430 | 3.29% | 2244 |
| chr20 | 1622099 | 2.52% | 2139 |
| chr21 | 803717 | 1.72% | 1084 |
| chr22 | 749155 | 1.47% | 1085 |
| chrX | 281879 | 0.18% | 331 |
| chrY | 13617 | 0.02% | 31 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 48456 | 185 | 61173 | 787.02 | 511 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF537LHJ.bed.gz | 884.56 KB | a6976441b5fdb52a29c7ba504197bb4e |
| ENCFF537LHJ.tabix.bed.gz | 461.03 KB | 6e1e315f7c424484f1cedc0c9990a344 |
| ENCFF537LHJ.tabix.bed.gz.tbi | 169.78 KB | 87ef6b3378dfde61268d0200a27eefa1 |
| genomic_resource.yaml | 2.23 KB | 2e91e4d7c02479887295a11f41b709db |
| statistics/ |