Resource

Id Histone_ChIP-seq/ENCSR659FAScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR659FAS [biosample_summary="Homo sapiens chorionic villus tissue female embryo (40 weeks)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR659FAS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:16:50.772893+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR659FAS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR659FAS float

Histone_ChIP-seq_ENCSR659FAS
Histone_ChIP-seq ENCSR659FAS [biosample_summary="Homo sapiens chorionic villus tissue female embryo (40 weeks)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR659FAS [1.52, 83]
n
17,615,469
mean
12.2
sd
5.07

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 176154690.55% 19692
chr1 1753819 0.70% 1948
chr2 1203494 0.50% 1360
chr3 1004831 0.51% 1088
chr4 702097 0.37% 749
chr5 863463 0.48% 903
chr6 1058248 0.62% 1167
chr7 869306 0.55% 979
chr8 644583 0.44% 688
chr9 737486 0.53% 819
chr10 708370 0.53% 770
chr11 972416 0.72% 1058
chr12 903702 0.68% 996
chr13 327453 0.29% 380
chr14 601495 0.56% 655
chr15 574169 0.56% 654
chr16 738983 0.82% 833
chr17 1049351 1.26% 1187
chr18 279908 0.35% 337
chr19 1222022 2.08% 1419
chr20 434700 0.67% 489
chr21 181592 0.39% 212
chr22 374821 0.74% 440
chrM 8994 54.28% 11
chrX 399929 0.26% 549
chrY 237 <0.01% 1
3341 contigs with no values (129060516 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 19692 154 8219 894.55 771
global segment-length histogram

Files

Filename Size md5
ENCFF888FUG.bed.gz 430.97 KB f9b8a4ce90dc87ac139b0ac97cb37b62
ENCFF888FUG.tabix.bed.gz 210.46 KB 966b1760de92137e3562482954884d8d
ENCFF888FUG.tabix.bed.gz.tbi 121.37 KB ae1a910e9c6d81fede788ad56d38109d
genomic_resource.yaml 2.01 KB 84385521044de14808c2a53e85cd0674
statistics/