Resource
| Id | Histone_ChIP-seq/ENCSR656ZEQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR656ZEQ [biosample_summary="Homo sapiens rectal smooth muscle tissue tissue female adult (50 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (50 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN318CKS|/analyses/ENCAN318CKS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF337SYV|/files/ENCFF337SYV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17500988 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR656ZEQ | float |
Histone_ChIP-seq_ENCSR656ZEQ |
Histone_ChIP-seq ENCSR656ZEQ [biosample_summary="Homo sapiens rectal smooth muscle tissue tissue female adult (50 years)" and target="H3K27ac"]
|
 |
[1.89, 97.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 61582307 | 1.91% | 61994 |
| chr1 | 6203916 | 2.49% | 5946 |
| chr1_KI270713v1_random | 601 | 1.48% | 1 |
| chr2 | 4925919 | 2.03% | 4836 |
| chr3 | 4074566 | 2.05% | 4120 |
| chr4 | 2582819 | 1.36% | 2762 |
| chr5 | 2697315 | 1.49% | 2810 |
| chr6 | 3056685 | 1.79% | 3213 |
| chr7 | 2722230 | 1.71% | 2889 |
| chr8 | 2230060 | 1.54% | 2390 |
| chr9 | 3158844 | 2.28% | 3094 |
| chr10 | 3645117 | 2.72% | 3533 |
| chr11 | 3381952 | 2.50% | 3217 |
| chr12 | 3450777 | 2.59% | 3394 |
| chr13 | 1435460 | 1.26% | 1528 |
| chr14 | 2331656 | 2.18% | 2151 |
| chr15 | 2029730 | 1.99% | 2126 |
| chr16 | 2107029 | 2.33% | 2139 |
| chr17 | 3206913 | 3.85% | 3071 |
| chr18 | 1094013 | 1.36% | 1202 |
| chr19 | 2392226 | 4.08% | 2421 |
| chr20 | 1611243 | 2.50% | 1675 |
| chr21 | 605348 | 1.30% | 646 |
| chr22 | 1392281 | 2.74% | 1387 |
| chrM | 269 | 1.62% | 1 |
| chrUn_GL000219v1 | 1151 | 0.64% | 2 |
| chrX | 1244187 | 0.80% | 1440 |
| 3340 contigs with no values (186067988 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 61994 | 175 | 47032 | 993.36 | 634 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF459MKC.bed.gz | 1.42 MB | 4d18cb945e35e794a20976caadb728e7 |
| ENCFF459MKC.tabix.bed.gz | 661.05 KB | af4cde6d47bceb437180f972d7f747ed |
| ENCFF459MKC.tabix.bed.gz.tbi | 204.54 KB | 538becb40bb189bb4a915331e629bd2e |
| genomic_resource.yaml | 2.05 KB | 0016501999dc19b56534cd92841321f8 |
| statistics/ |