Resource

Id Histone_ChIP-seq/ENCSR656PGJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR656PGJ [biosample_summary="Homo sapiens UCSF-4" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR656PGJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007116/
  • biosample_summary: Homo sapiens UCSF-4
  • date_created: 2017-03-22T16:17:04.915806+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR656PGJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR656PGJ float

Histone_ChIP-seq_ENCSR656PGJ
Histone_ChIP-seq ENCSR656PGJ [biosample_summary="Homo sapiens UCSF-4" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR656PGJ [1.98, 36.8]
n
7,227,512
mean
6.25
sd
3.45

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 72275120.22% 18396
chr1 671804 0.27% 1674
chr2 495152 0.20% 1307
chr3 397547 0.20% 1051
chr4 267276 0.14% 725
chr5 337736 0.19% 871
chr6 419087 0.25% 989
chr7 412026 0.26% 1082
chr8 259415 0.18% 724
chr9 315487 0.23% 858
chr10 296697 0.22% 779
chr11 358158 0.27% 886
chr12 554802 0.42% 1285
chr13 155445 0.14% 420
chr14 238640 0.22% 592
chr15 201012 0.20% 536
chr16 316039 0.35% 803
chr17 396649 0.48% 966
chr18 116037 0.14% 335
chr19 461042 0.79% 1090
chr20 201428 0.31% 505
chr21 90742 0.19% 241
chr22 185299 0.36% 469
chrX 79435 0.05% 207
chrY 557 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18396 165 3617 392.88 315
global segment-length histogram

Files

Filename Size md5
ENCFF923JJL.bed.gz 373.8 KB 6aca5197bf33862afd84d763c6c619c0
ENCFF923JJL.tabix.bed.gz 186.59 KB d1b9a0864be5097c4e3fe5ceaf430d82
ENCFF923JJL.tabix.bed.gz.tbi 122.86 KB f50de4b74e7df686f34d0bad1f0364a6
genomic_resource.yaml 1.37 KB aa2341cf1d2cdf91f2c6bc3bcafc9ebf
statistics/