Resource
| Id | Histone_ChIP-seq/ENCSR655QXR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR655QXR [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN115QES|/analyses/ENCAN115QES/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF597WLD|/files/ENCFF597WLD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF597WLD|/files/ENCFF597WLD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.81. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR655QXR | float |
Histone_ChIP-seq_ENCSR655QXR |
Histone_ChIP-seq ENCSR655QXR [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)" and target="H3K27me3"]
|
 |
[1.78, 8.28] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8914558 | 0.28% | 14983 |
| chr1 | 802963 | 0.32% | 1514 |
| chr2 | 746948 | 0.31% | 1077 |
| chr3 | 296219 | 0.15% | 504 |
| chr4 | 396015 | 0.21% | 637 |
| chr5 | 486787 | 0.27% | 759 |
| chr6 | 546801 | 0.32% | 930 |
| chr7 | 561703 | 0.35% | 800 |
| chr8 | 320857 | 0.22% | 589 |
| chr9 | 384789 | 0.28% | 617 |
| chr10 | 494989 | 0.37% | 795 |
| chr11 | 346446 | 0.26% | 639 |
| chr12 | 403274 | 0.30% | 710 |
| chr13 | 235224 | 0.21% | 324 |
| chr14 | 303726 | 0.28% | 484 |
| chr15 | 239035 | 0.23% | 422 |
| chr16 | 288665 | 0.32% | 519 |
| chr17 | 614997 | 0.74% | 993 |
| chr18 | 133590 | 0.17% | 228 |
| chr19 | 553596 | 0.94% | 1017 |
| chr20 | 398970 | 0.62% | 737 |
| chr21 | 101738 | 0.22% | 167 |
| chr22 | 229761 | 0.45% | 460 |
| chrX | 27465 | 0.02% | 61 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 14983 | 175 | 8523 | 594.98 | 408 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF366MFG.bed.gz | 264.9 KB | c840c06c69876c6ac749a6a5917b8602 |
| ENCFF366MFG.tabix.bed.gz | 142.7 KB | 842e9d8c07fb8c670bd70bbf73d1a856 |
| ENCFF366MFG.tabix.bed.gz.tbi | 67.34 KB | ba5daee7b62305ad83430e3a98ff1ac9 |
| genomic_resource.yaml | 2.79 KB | a19d1e930212dfd77ff6c7c38c9dc403 |
| statistics/ |