Resource

Id Histone_ChIP-seq/ENCSR654KVJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR654KVJ [biosample_summary="Homo sapiens sigmoid colon tissue male adult (37 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR654KVJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001159/
  • biosample_summary: Homo sapiens sigmoid colon tissue male adult (37 years)
  • date_created: 2019-04-27T23:23:29.211010+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR654KVJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR654KVJ float

Histone_ChIP-seq_ENCSR654KVJ
Histone_ChIP-seq ENCSR654KVJ [biosample_summary="Homo sapiens sigmoid colon tissue male adult (37 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR654KVJ [1.59, 10.5]
n
20,159,054
mean
3.91
sd
1.16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 201590540.63% 25951
chr1 1266727 0.51% 1800
chr1_KI270709v1_random 3846 5.75% 5
chr2 1327000 0.55% 1958
chr2_KI270716v1_random 2610 1.70% 3
chr3 1116094 0.56% 1703
chr4 1140031 0.60% 1525
chr4_GL000008v2_random 4178 1.99% 2
chr5 1560641 0.86% 1858
chr5_GL000208v1_random 262 0.28% 1
chr6 882994 0.52% 1365
chr7 1291224 0.81% 1697
chr8 943753 0.65% 1373
chr9 718129 0.52% 932
chr9_KI270719v1_random 1525 0.86% 2
chr10 1128179 0.84% 1438
chr11 967505 0.72% 1275
chr12 1084375 0.81% 1395
chr13 446109 0.39% 687
chr14 499882 0.47% 755
chr14_GL000225v1_random 10544 4.99% 19
chr14_KI270725v1_random 1686 0.98% 4
chr15 543936 0.53% 693
chr16 600113 0.66% 781
chr17 362585 0.44% 491
chr17_GL000205v2_random 7697 4.15% 11
chr17_KI270729v1_random 40996 14.60% 53
chr17_KI270730v1_random 11308 10.05% 16
chr18 370551 0.46% 543
chr19 2647115 4.52% 1945
chr20 377023 0.59% 552
chr21 318596 0.68% 406
chr22 193029 0.38% 282
chr22_KI270732v1_random 1820 4.38% 1
chr22_KI270733v1_random 2166 1.20% 6
chr22_KI270735v1_random 4765 11.13% 5
chr22_KI270736v1_random 40477 22.25% 45
chr22_KI270738v1_random 6524 6.57% 10
chrM 12876 77.71% 8
chrUn_GL000216v2 5003 2.83% 10
chrUn_GL000218v1 375 0.23% 1
chrUn_GL000219v1 10715 5.98% 10
chrUn_GL000220v1 1235 0.76% 4
chrUn_GL000224v1 8684 4.83% 9
chrUn_KI270333v1 240 8.89% 1
chrUn_KI270336v1 285 27.78% 1
chrUn_KI270337v1 637 56.82% 1
chrUn_KI270429v1 783 57.53% 1
chrUn_KI270435v1 1211 1.30% 3
chrUn_KI270438v1 27411 24.36% 31
chrUn_KI270442v1 55176 14.07% 75
chrUn_KI270465v1 378 21.31% 1
chrUn_KI270466v1 996 80.78% 1
chrUn_KI270467v1 2384 60.82% 2
chrUn_KI270507v1 420 7.85% 1
chrUn_KI270508v1 489 25.06% 1
chrUn_KI270512v1 1605 7.07% 3
chrUn_KI270517v1 674 20.72% 1
chrUn_KI270519v1 2127 1.54% 4
chrUn_KI270538v1 998 1.09% 2
chrUn_KI270589v1 2614 5.88% 2
chrUn_KI270590v1 1234 26.34% 1
chrUn_KI270591v1 1437 24.79% 3
chrUn_KI270742v1 328 0.18% 1
chrUn_KI270744v1 3586 2.13% 4
chrUn_KI270749v1 2201 1.39% 2
chrUn_KI270751v1 2179 1.45% 2
chrUn_KI270756v1 527 0.66% 1
chrUn_KI270757v1 5429 7.62% 8
chrX 51337 0.03% 80
chrY 27485 0.05% 39
3296 contigs with no values (124249909 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 25951 185 33401 776.81 593
global segment-length histogram

Files

Filename Size md5
ENCFF995FXP.bed.gz 532.11 KB 953877b35b3ed146d39f94153c8a53b4
ENCFF995FXP.tabix.bed.gz 269.41 KB 8b6da21d5fc1a4f6f861e01807482281
ENCFF995FXP.tabix.bed.gz.tbi 148.63 KB de8bee431ea97b5cf1fbb87674da45fc
genomic_resource.yaml 1.5 KB ff8356249af222ee338571e86172684b
statistics/