Resource

Id Histone_ChIP-seq/ENCSR649DTMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR649DTM [biosample_summary="Homo sapiens BLaER1 12 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR649DTM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 12 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:20.671333+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR649DTM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 12 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR649DTM float

Histone_ChIP-seq_ENCSR649DTM
Histone_ChIP-seq ENCSR649DTM [biosample_summary="Homo sapiens BLaER1 12 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR649DTM [1.6, 32.1]
n
238,679,769
mean
9.7
sd
5.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2386797697.42% 126700
chr1 22371824 8.99% 11620
chr2 18283230 7.55% 10037
chr3 12953880 6.53% 7460
chr4 8660381 4.55% 5070
chr5 11557697 6.37% 6338
chr6 11988966 7.02% 6716
chr7 11494934 7.21% 6448
chr8 10808503 7.45% 6056
chr9 10503914 7.59% 5360
chr10 12452106 9.31% 6680
chr11 11963866 8.86% 6216
chr12 11014146 8.26% 5811
chr13 5254913 4.59% 3178
chr14 7911816 7.39% 4086
chr15 7817619 7.66% 4180
chr16 10456468 11.57% 4965
chr17 13737360 16.50% 6329
chr18 4757613 5.92% 2725
chr19 10769847 18.37% 5056
chr20 8481527 13.16% 4329
chr21 3222494 6.90% 1674
chr22 7209438 14.19% 3212
chrX 5007227 3.21% 3154
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 126700 240 69421 1883.82 1219
global segment-length histogram

Files

Filename Size md5
ENCFF935JWO.bed.gz 3.28 MB 8cd96bc29241700d96950b53622dd011
ENCFF935JWO.tabix.bed.gz 1.38 MB 7c6eb8facd038ab7c3a561d1e61664d4
ENCFF935JWO.tabix.bed.gz.tbi 338.88 KB b52823bcc4b8be71e876b50c5ecead8e
genomic_resource.yaml 2.31 KB f34ca45c09d3ea194a9b90171849cb3b
statistics/