Resource

Id Histone_ChIP-seq/ENCSR648GKFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR648GKF [biosample_summary="Homo sapiens placenta tissue male embryo" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR648GKF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue male embryo
  • date_created: 2022-05-11T01:54:15.734906+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR648GKF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR648GKF float

Histone_ChIP-seq_ENCSR648GKF
Histone_ChIP-seq ENCSR648GKF [biosample_summary="Homo sapiens placenta tissue male embryo" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR648GKF [1.78, 29.5]
n
22,005,656
mean
12.3
sd
5.19

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 220056560.68% 18217
chr1 2206254 0.89% 1821
chr2 1499291 0.62% 1255
chr3 1254859 0.63% 1006
chr4 873181 0.46% 695
chr5 1073268 0.59% 840
chr6 1335227 0.78% 1078
chr7 1125293 0.71% 956
chr8 787537 0.54% 632
chr9 910803 0.66% 743
chr10 895249 0.67% 720
chr11 1193745 0.88% 966
chr12 1119760 0.84% 899
chr13 421424 0.37% 337
chr14 732239 0.68% 593
chr15 719006 0.70% 608
chr16 899611 1.00% 744
chr17 1306343 1.57% 1055
chr18 355674 0.44% 294
chr19 1509074 2.57% 1349
chr20 543428 0.84% 451
chr21 211977 0.45% 182
chr22 484738 0.95% 425
chrX 524570 0.34% 547
chrY 23105 0.04% 21
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 18217 218 9900 1207.97 1073
global segment-length histogram

Files

Filename Size md5
ENCFF661FUQ.bed.gz 450.83 KB ae0fb252f1cdf22aeefb4504a3ed3846
ENCFF661FUQ.tabix.bed.gz 205.46 KB 1476797f950ee7b5fac69e918d42ae6f
ENCFF661FUQ.tabix.bed.gz.tbi 125.14 KB 330e0f1c2ce0c275c20640f09422a947
genomic_resource.yaml 1.44 KB a3ab11f8aca96010dfc97f0cb600778c
statistics/