Resource

Id Histone_ChIP-seq/ENCSR647HAQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR647HAQ [biosample_summary="Homo sapiens vagina tissue female adult (51 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR647HAQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000996/
  • biosample_summary: Homo sapiens vagina tissue female adult (51 years)
  • date_created: 2018-10-31T03:16:15.589150+00:00
  • date_released: 2019-08-01
  • doi: 10.17989/ENCSR647HAQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR647HAQ float

Histone_ChIP-seq_ENCSR647HAQ
Histone_ChIP-seq ENCSR647HAQ [biosample_summary="Homo sapiens vagina tissue female adult (51 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR647HAQ [1.56, 89]
n
45,899,985
mean
35.5
sd
19.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 458999851.43% 24857
chr1 4578134 1.84% 2475
chr2 3113970 1.29% 1654
chr3 2553905 1.29% 1384
chr4 1843988 0.97% 993
chr5 2126936 1.17% 1114
chr6 2621521 1.53% 1397
chr7 2220913 1.39% 1212
chr8 1676116 1.15% 907
chr9 1899666 1.37% 1051
chr10 1924089 1.44% 1061
chr11 2497545 1.85% 1281
chr12 2482633 1.86% 1294
chr13 942501 0.82% 509
chr14 1478317 1.38% 763
chr15 1511966 1.48% 827
chr16 1795023 1.99% 1004
chr17 2724475 3.27% 1475
chr18 789901 0.98% 442
chr19 2993751 5.11% 1703
chr20 1181297 1.83% 657
chr21 496561 1.06% 277
chr22 1058486 2.08% 593
chrX 1387511 0.89% 783
chrY 780 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 24857 243 20638 1846.56 1640
global segment-length histogram

Files

Filename Size md5
ENCFF367PZY.bed.gz 707.08 KB 8d8f2f1141d214cf0b7b6a8934457ade
ENCFF367PZY.tabix.bed.gz 294.63 KB 73bbafcd9377ae4d974604bcbed1f81e
ENCFF367PZY.tabix.bed.gz.tbi 161.31 KB 3d2bb002981d2415fe5fdfba9441ac8d
genomic_resource.yaml 1.49 KB 42438c0969a002681568870f04839651
statistics/