Resource

Id Histone_ChIP-seq/ENCSR646YBAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR646YBA [biosample_summary="Homo sapiens chorionic villus tissue male embryo (38 weeks)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR646YBA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue male embryo (38 weeks)
  • date_created: 2017-03-22T16:16:47.434104+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR646YBA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (38 weeks)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR646YBA float

Histone_ChIP-seq_ENCSR646YBA
Histone_ChIP-seq ENCSR646YBA [biosample_summary="Homo sapiens chorionic villus tissue male embryo (38 weeks)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR646YBA [1.46, 11.9]
n
25,952,435
mean
4.78
sd
1.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 259524350.81% 52030
chr1 2515141 1.01% 5094
chr1_KI270711v1_random 358 0.85% 1
chr2 1506188 0.62% 3357
chr3 1295623 0.65% 2782
chr4 743986 0.39% 1567
chr5 1096303 0.60% 2402
chr6 921152 0.54% 2019
chr7 1268750 0.80% 2531
chr8 668850 0.46% 1456
chr9 1244703 0.90% 2470
chr10 985266 0.74% 2185
chr11 1597119 1.18% 3026
chr12 1480146 1.11% 2940
chr13 299144 0.26% 727
chr14 832776 0.78% 1819
chr14_GL000194v1_random 196 0.10% 1
chr15 785450 0.77% 1688
chr16 1655278 1.83% 3027
chr17 1925794 2.31% 3557
chr18 278458 0.35% 653
chr19 2364879 4.03% 3945
chr20 964574 1.50% 1879
chr21 322355 0.69% 666
chr22 1024454 2.02% 1848
chrUn_GL000195v1 190 0.10% 1
chrUn_GL000219v1 242 0.14% 1
chrUn_KI270435v1 291 0.31% 1
chrUn_KI270438v1 783 0.70% 2
chrUn_KI270467v1 1099 28.04% 2
chrUn_KI270757v1 194 0.27% 1
chrX 169659 0.11% 372
chrY 3034 0.01% 10
3334 contigs with no values (128200653 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52030 135 6140 498.8 394
global segment-length histogram

Files

Filename Size md5
ENCFF343VJB.bed.gz 955.96 KB ed0ca7903e5f806144b35de77ec64dd4
ENCFF343VJB.tabix.bed.gz 497.45 KB 4d62015095fa5b6b006f5a4c9b0b5a41
ENCFF343VJB.tabix.bed.gz.tbi 127.71 KB 6253e6841e80bb8486ae7a2725606414
genomic_resource.yaml 2.01 KB e1d1b43e41e8818341c842f9a6c5c6c5
statistics/