Resource

Id Histone_ChIP-seq/ENCSR645BCHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR645BCH [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR645BCH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0011020/
  • biosample_summary: Homo sapiens neural progenitor cell originated from H9
  • date_created: 2016-04-11T19:07:57.975076+00:00
  • date_released: 2016-06-14
  • doi: 10.17989/ENCSR645BCH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR645BCH float

Histone_ChIP-seq_ENCSR645BCH
Histone_ChIP-seq ENCSR645BCH [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR645BCH [1.31, 21.4]
n
106,821,739
mean
7.36
sd
4.02

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1068217393.32% 84291
chr1 10186494 4.09% 7856
chr2 8186969 3.38% 6601
chr3 6640013 3.35% 5360
chr4 4993749 2.63% 4033
chr5 5939543 3.27% 4782
chr6 6395377 3.74% 4844
chr7 5248755 3.29% 4294
chr8 4505843 3.10% 3738
chr9 4548746 3.29% 3592
chr10 5025597 3.76% 4066
chr11 5853192 4.33% 4501
chr12 5513548 4.14% 4223
chr13 2714731 2.37% 2199
chr14 3613115 3.38% 2811
chr15 3553188 3.48% 2799
chr16 3611605 4.00% 2941
chr17 4925206 5.92% 3539
chr18 2518675 3.13% 2115
chr19 3970220 6.77% 2900
chr20 2818947 4.37% 2234
chr21 1006848 2.16% 864
chr22 2008025 3.95% 1618
chrX 3042674 1.95% 2380
chrY 679 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84291 205 33224 1267.3 926
global segment-length histogram

Files

Filename Size md5
ENCFF137GHM.bed.gz 2.16 MB 61b70847910efceb6440bb1cd8510e41
ENCFF137GHM.tabix.bed.gz 944.17 KB de1819ca2bf47c63ebee592ff97ecfc0
ENCFF137GHM.tabix.bed.gz.tbi 357.85 KB bdffc0796ec81ba70b0e0d73a9fdcea6
genomic_resource.yaml 1.52 KB 9da51d1dda75231d7d36c4be56ccf8b5
statistics/