Resource

Id Histone_ChIP-seq/ENCSR644SHGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR644SHG [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (58 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR644SHG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (58 years)
  • date_created: 2020-07-02T16:44:53.610527+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR644SHG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (58 years) with basal cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR644SHG float

Histone_ChIP-seq_ENCSR644SHG
Histone_ChIP-seq ENCSR644SHG [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (58 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR644SHG [1.79, 62.6]
n
35,305,694
mean
21.3
sd
10.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 353056941.10% 21051
chr1 3594362 1.44% 2159
chr2 2403223 0.99% 1389
chr3 1930728 0.97% 1107
chr4 1305738 0.69% 740
chr5 1671681 0.92% 957
chr6 2019106 1.18% 1145
chr7 1714294 1.08% 1070
chr8 1289552 0.89% 765
chr9 1448764 1.05% 900
chr10 1465815 1.10% 868
chr11 1937502 1.43% 1105
chr12 1874672 1.41% 1086
chr13 707136 0.62% 418
chr14 1153148 1.08% 650
chr15 1132684 1.11% 674
chr16 1417333 1.57% 853
chr17 2161602 2.60% 1265
chr18 582366 0.72% 348
chr19 2373714 4.05% 1538
chr20 925254 1.44% 576
chr21 350932 0.75% 225
chr22 828086 1.63% 526
chrX 979068 0.63% 663
chrY 38934 0.07% 24
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21051 225 13049 1677.15 1551
global segment-length histogram

Files

Filename Size md5
ENCFF068YJW.bed.gz 549.77 KB 5a4ebdc619686d019701a4175e873152
ENCFF068YJW.tabix.bed.gz 243.54 KB 4e662329b8d177e30e67a2b9d900534c
ENCFF068YJW.tabix.bed.gz.tbi 142.68 KB 69457b4588b0b92b8147a0b2babc55be
genomic_resource.yaml 1.86 KB beb1acba78ac02ddcbad1133bc5fa4df
statistics/