Resource
| Id | Histone_ChIP-seq/ENCSR642PBI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR642PBI [biosample_summary="Homo sapiens BLaER1 9 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: 9 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR642PBI | float |
Histone_ChIP-seq_ENCSR642PBI |
Histone_ChIP-seq ENCSR642PBI [biosample_summary="Homo sapiens BLaER1 9 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me3"]
|
 |
[1.21, 99.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 58698650 | 1.82% | 60509 |
| chr1 | 5511152 | 2.21% | 5495 |
| chr1_KI270706v1_random | 613 | 0.35% | 2 |
| chr1_KI270709v1_random | 2662 | 3.98% | 5 |
| chr1_KI270712v1_random | 2333 | 1.33% | 4 |
| chr1_KI270713v1_random | 2805 | 6.88% | 5 |
| chr2 | 3918503 | 1.62% | 4238 |
| chr3 | 2913923 | 1.47% | 2918 |
| chr3_GL000221v1_random | 764 | 0.49% | 1 |
| chr4 | 2080857 | 1.09% | 2148 |
| chr4_GL000008v2_random | 819 | 0.39% | 2 |
| chr5 | 2741635 | 1.51% | 2757 |
| chr6 | 2960625 | 1.73% | 2717 |
| chr7 | 2844219 | 1.78% | 2984 |
| chr8 | 2450440 | 1.69% | 2742 |
| chr9 | 2447570 | 1.77% | 2575 |
| chr9_KI270717v1_random | 264 | 0.66% | 1 |
| chr9_KI270719v1_random | 407 | 0.23% | 1 |
| chr10 | 2593717 | 1.94% | 2847 |
| chr11 | 2930353 | 2.17% | 2874 |
| chr12 | 2882897 | 2.16% | 2803 |
| chr13 | 1117715 | 0.98% | 1174 |
| chr14 | 1928796 | 1.80% | 1986 |
| chr14_GL000009v2_random | 702 | 0.35% | 1 |
| chr14_GL000194v1_random | 1360 | 0.71% | 2 |
| chr14_GL000225v1_random | 2476 | 1.17% | 7 |
| chr14_KI270724v1_random | 490 | 1.24% | 1 |
| chr14_KI270725v1_random | 297 | 0.17% | 1 |
| chr15 | 1822580 | 1.79% | 1889 |
| chr15_KI270727v1_random | 427 | 0.10% | 1 |
| chr16 | 2652352 | 2.94% | 2741 |
| chr16_KI270728v1_random | 1652 | 0.09% | 4 |
| chr17 | 3663250 | 4.40% | 3606 |
| chr17_GL000205v2_random | 10884 | 5.86% | 7 |
| chr17_KI270729v1_random | 15280 | 5.44% | 24 |
| chr17_KI270730v1_random | 2230 | 1.98% | 7 |
| chr18 | 948317 | 1.18% | 1006 |
| chr19 | 4567130 | 7.79% | 4894 |
| chr20 | 1685072 | 2.61% | 1803 |
| chr21 | 820945 | 1.76% | 969 |
| chr22 | 1600448 | 3.15% | 1709 |
| chr22_KI270732v1_random | 288 | 0.69% | 1 |
| chr22_KI270733v1_random | 5566 | 3.10% | 13 |
| chr22_KI270735v1_random | 252 | 0.59% | 1 |
| chr22_KI270736v1_random | 3863 | 2.12% | 11 |
| chr22_KI270737v1_random | 1011 | 0.97% | 3 |
| chr22_KI270738v1_random | 284 | 0.29% | 1 |
| chrM | 5178 | 31.25% | 9 |
| chrUn_GL000195v1 | 4647 | 2.54% | 4 |
| chrUn_GL000214v1 | 253 | 0.18% | 1 |
| chrUn_GL000216v2 | 12926 | 7.32% | 28 |
| chrUn_GL000219v1 | 4220 | 2.35% | 4 |
| chrUn_GL000220v1 | 1982 | 1.22% | 6 |
| chrUn_GL000224v1 | 741 | 0.41% | 2 |
| chrUn_KI270435v1 | 612 | 0.66% | 1 |
| chrUn_KI270438v1 | 9492 | 8.44% | 10 |
| chrUn_KI270442v1 | 11149 | 2.84% | 31 |
| chrUn_KI270512v1 | 250 | 1.10% | 1 |
| chrUn_KI270519v1 | 250 | 0.18% | 1 |
| chrUn_KI270589v1 | 712 | 1.60% | 2 |
| chrUn_KI270744v1 | 1848 | 1.10% | 6 |
| chrUn_KI270749v1 | 800 | 0.50% | 1 |
| chrUn_KI270754v1 | 301 | 0.75% | 1 |
| chrUn_KI270756v1 | 825 | 1.04% | 3 |
| chrUn_KI270757v1 | 291 | 0.41% | 1 |
| chrX | 1488683 | 0.95% | 1381 |
| chrY | 13265 | 0.02% | 35 |
| 3300 contigs with no values (121314821 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 60509 | 250 | 19735 | 970.08 | 485 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF585KOG.bed.gz | 1.32 MB | e807f11f4fe96247358a6763e2035c87 |
| ENCFF585KOG.tabix.bed.gz | 634.27 KB | 15c2ae3b76cceb037816c8224389d6f7 |
| ENCFF585KOG.tabix.bed.gz.tbi | 225.76 KB | 960836d70e7a6ea61b9a07db0227c460 |
| genomic_resource.yaml | 3.11 KB | 23a786335edf8e4a07adcbd7906093df |
| statistics/ |