Resource
| Id | Histone_ChIP-seq/ENCSR642HII |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR642HII [biosample_summary="Homo sapiens liver tissue female adult (25 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (25 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN844FZY|/analyses/ENCAN844FZY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF932RBN|/files/ENCFF932RBN/} processed by ChIP-seq ENCODE3 hg19 pipeline has 20844302 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR642HII | float |
Histone_ChIP-seq_ENCSR642HII |
Histone_ChIP-seq ENCSR642HII [biosample_summary="Homo sapiens liver tissue female adult (25 years)" and target="H3K4me1"]
|
 |
[1.83, 24.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 96597578 | 3.00% | 129823 |
| chr1 | 9506607 | 3.82% | 12534 |
| chr2 | 7512016 | 3.10% | 10081 |
| chr3 | 6621140 | 3.34% | 8904 |
| chr4 | 4236723 | 2.23% | 6082 |
| chr5 | 5111829 | 2.82% | 6829 |
| chr6 | 5492933 | 3.22% | 7679 |
| chr7 | 4574083 | 2.87% | 6423 |
| chr8 | 4230531 | 2.91% | 5796 |
| chr9 | 4656601 | 3.36% | 5878 |
| chr10 | 4788494 | 3.58% | 6482 |
| chr11 | 5278943 | 3.91% | 6679 |
| chr12 | 4920925 | 3.69% | 6700 |
| chr13 | 2318501 | 2.03% | 3338 |
| chr14 | 3182025 | 2.97% | 4153 |
| chr15 | 3388609 | 3.32% | 4506 |
| chr16 | 3607720 | 3.99% | 4589 |
| chr17 | 4559110 | 5.48% | 5878 |
| chr18 | 2002498 | 2.49% | 2768 |
| chr19 | 3252788 | 5.55% | 4400 |
| chr20 | 2634511 | 4.09% | 3417 |
| chr21 | 1077367 | 2.31% | 1453 |
| chr22 | 2360863 | 4.65% | 2940 |
| chrX | 1282761 | 0.82% | 2314 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 129823 | 170 | 19136 | 744.07 | 572 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF323TFF.bed.gz | 2.72 MB | 286215d6c6d1a115cb44ea03887b29ab |
| ENCFF323TFF.tabix.bed.gz | 1.29 MB | c702387987bf90dc76f0db7724308022 |
| ENCFF323TFF.tabix.bed.gz.tbi | 317.48 KB | 9be8de267ae897d43fb42f95c66e878d |
| genomic_resource.yaml | 1.98 KB | 2a0b47de9e2d6e0a35e73e4885dbdc93 |
| statistics/ |