Resource
| Id | Histone_ChIP-seq/ENCSR638HSG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR638HSG [biosample_summary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN043SEE|/analyses/ENCAN043SEE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF778ORW|/files/ENCFF778ORW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 29446999 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR638HSG | float |
Histone_ChIP-seq_ENCSR638HSG |
Histone_ChIP-seq ENCSR638HSG [biosample_summary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K4me1"]
|
 |
[1.79, 27.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 47783945 | 1.49% | 110284 |
| chr1 | 5216251 | 2.10% | 11509 |
| chr2 | 3532253 | 1.46% | 8231 |
| chr3 | 2552013 | 1.29% | 6126 |
| chr4 | 1340521 | 0.70% | 3429 |
| chr5 | 2104925 | 1.16% | 5201 |
| chr6 | 2095620 | 1.23% | 5348 |
| chr7 | 1971912 | 1.24% | 4915 |
| chr8 | 1678496 | 1.16% | 4063 |
| chr9 | 2562812 | 1.85% | 5642 |
| chr10 | 2673729 | 2.00% | 5995 |
| chr11 | 3279280 | 2.43% | 7177 |
| chr12 | 2028358 | 1.52% | 4725 |
| chr13 | 840315 | 0.73% | 2144 |
| chr14 | 1714497 | 1.60% | 3886 |
| chr15 | 1700001 | 1.67% | 4016 |
| chr16 | 2069166 | 2.29% | 4709 |
| chr17 | 3261286 | 3.92% | 6933 |
| chr18 | 831913 | 1.04% | 2077 |
| chr19 | 2242087 | 3.82% | 4838 |
| chr20 | 1591686 | 2.47% | 3552 |
| chr21 | 523041 | 1.12% | 1286 |
| chr22 | 1645957 | 3.24% | 3484 |
| chrX | 327676 | 0.21% | 997 |
| chrY | 150 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 110284 | 145 | 8194 | 433.28 | 331 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF985VDO.bed.gz | 2.09 MB | 08a54ef5e5a13b0462d11037386003bb |
| ENCFF985VDO.tabix.bed.gz | 1.04 MB | b7c536390aa93f62a7bc0890806d2432 |
| ENCFF985VDO.tabix.bed.gz.tbi | 294.72 KB | b7b5833c0f9a5b4c1ccc7d2f45d1b1e3 |
| genomic_resource.yaml | 2.03 KB | 7cfeeb88f025441e0819809bf98b0807 |
| statistics/ |