Resource

Id Histone_ChIP-seq/ENCSR635XBAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR635XBA [biosample_summary="Homo sapiens mammary stem cell female adult (33 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR635XBA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002451/
  • biosample_summary: Homo sapiens mammary stem cell female adult (33 years)
  • date_created: 2017-03-22T16:19:31.310945+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR635XBA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR635XBA float

Histone_ChIP-seq_ENCSR635XBA
Histone_ChIP-seq ENCSR635XBA [biosample_summary="Homo sapiens mammary stem cell female adult (33 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR635XBA [2.01, 11.6]
n
39,504,528
mean
4.46
sd
1.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 395045281.23% 85971
chr1 3709919 1.49% 8215
chr2 2386175 0.99% 5698
chr3 2083396 1.05% 4801
chr4 1149937 0.60% 2728
chr5 1483671 0.82% 3451
chr6 1483287 0.87% 3537
chr7 1886275 1.18% 4235
chr8 1104451 0.76% 2596
chr9 2020290 1.46% 4276
chr10 1544994 1.15% 3642
chr11 2154056 1.59% 4537
chr12 2184161 1.64% 4613
chr13 565827 0.49% 1442
chr14 1253348 1.17% 2895
chr15 1363536 1.34% 3079
chr16 2347024 2.60% 4655
chr17 2771301 3.33% 5727
chr18 459700 0.57% 1161
chr19 3823834 6.52% 7005
chr20 1315285 2.04% 2789
chr21 551040 1.18% 1129
chr22 1615727 3.18% 3143
chrX 247294 0.16% 617
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 85971 180 5476 459.51 355
global segment-length histogram

Files

Filename Size md5
ENCFF540EUH.bed.gz 1.33 MB 7276433521384bd32059e30b3959ef43
ENCFF540EUH.tabix.bed.gz 758.97 KB 6aa711ffacb08372c5d9e4a1b74adc3a
ENCFF540EUH.tabix.bed.gz.tbi 189.06 KB bfe42a388cb3cc68353899e791048a4d
genomic_resource.yaml 2.01 KB 743bd97182819812051efd9fbbaad289
statistics/