Resource

Id Histone_ChIP-seq/ENCSR635IRNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR635IRN [biosample_summary="Homo sapiens spleen tissue male adult (54 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR635IRN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002106/
  • biosample_summary: Homo sapiens spleen tissue male adult (54 years)
  • date_created: 2017-12-06T21:21:47.644816+00:00
  • date_released: 2019-09-11
  • doi: 10.17989/ENCSR635IRN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR635IRN float

Histone_ChIP-seq_ENCSR635IRN
Histone_ChIP-seq ENCSR635IRN [biosample_summary="Homo sapiens spleen tissue male adult (54 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR635IRN [1.47, 18.4]
n
215,230,886
mean
4.95
sd
2.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2152308866.69% 125646
chr1 21336226 8.57% 12239
chr1_KI270712v1_random 2848 1.62% 5
chr1_KI270713v1_random 396 0.97% 1
chr2 16841238 6.95% 9996
chr3 13621627 6.87% 8465
chr4 7667807 4.03% 5070
chr5 10352370 5.70% 6196
chr6 11934853 6.99% 7330
chr7 10117198 6.35% 6365
chr8 8758972 6.03% 5287
chr9 9309666 6.73% 5377
chr10 10744975 8.03% 6278
chr11 11604729 8.59% 6336
chr12 10887581 8.17% 6420
chr13 4523695 3.96% 2901
chr14 7650865 7.15% 4372
chr15 7602176 7.45% 4367
chr16 8574151 9.49% 4585
chr17 12527051 15.05% 6506
chr17_GL000205v2_random 1569 0.85% 2
chr18 3799448 4.73% 2487
chr19 9866829 16.83% 5106
chr20 6749959 10.47% 3649
chr21 2553351 5.47% 1484
chr22 5816822 11.45% 3026
chrUn_GL000219v1 1422 0.79% 1
chrX 2310383 1.48% 1725
chrY 72679 0.13% 70
3338 contigs with no values (128495508 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 125646 215 65313 1712.99 1128
global segment-length histogram

Files

Filename Size md5
ENCFF554UPB.bed.gz 2.93 MB 2f0cbadce423a632a207099380f2887a
ENCFF554UPB.tabix.bed.gz 1.32 MB b94527498ec6372cdad80ca3ae7afe16
ENCFF554UPB.tabix.bed.gz.tbi 279.26 KB 13c4d82848f3ecbf7442c8e1c826f697
genomic_resource.yaml 1.48 KB a0619dfa7d99a037b6274435ea1647bd
statistics/