Resource

Id Histone_ChIP-seq/ENCSR632VNIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR632VNI [biosample_summary="Homo sapiens BLaER1 3 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR632VNI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 3 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:27.651789+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR632VNI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 3 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR632VNI float

Histone_ChIP-seq_ENCSR632VNI
Histone_ChIP-seq ENCSR632VNI [biosample_summary="Homo sapiens BLaER1 3 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR632VNI [1.21, 69.5]
n
37,826,310
mean
23.6
sd
14.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 378263101.18% 30952
chr1 3626873 1.46% 2873
chr1_KI270709v1_random 270 0.40% 1
chr1_KI270712v1_random 816 0.46% 2
chr1_KI270713v1_random 1123 2.76% 2
chr2 2517095 1.04% 2053
chr3 1998072 1.01% 1579
chr3_GL000221v1_random 830 0.53% 1
chr4 1411712 0.74% 1110
chr5 1841452 1.01% 1422
chr6 2123681 1.24% 1591
chr7 1820398 1.14% 1542
chr8 1426807 0.98% 1220
chr9 1569607 1.13% 1273
chr9_KI270719v1_random 316 0.18% 1
chr10 1623356 1.21% 1358
chr11 1902167 1.41% 1472
chr12 1928916 1.45% 1510
chr13 770603 0.67% 629
chr14 1285137 1.20% 1032
chr14_GL000009v2_random 893 0.44% 2
chr14_GL000194v1_random 1063 0.56% 1
chr14_GL000225v1_random 411 0.19% 1
chr14_KI270724v1_random 265 0.67% 1
chr14_KI270725v1_random 265 0.15% 1
chr15 1164348 1.14% 934
chr15_KI270727v1_random 434 0.10% 1
chr16 1574499 1.74% 1319
chr16_KI270728v1_random 251 0.01% 1
chr17 2298167 2.76% 1820
chr17_GL000205v2_random 10163 5.48% 8
chr17_KI270729v1_random 4554 1.62% 10
chr18 632973 0.79% 524
chr19 2734637 4.67% 2650
chr20 1009117 1.57% 843
chr21 492869 1.06% 452
chr22 937677 1.85% 771
chr22_KI270733v1_random 2603 1.45% 5
chrUn_GL000195v1 3984 2.18% 7
chrUn_GL000216v2 687 0.39% 1
chrUn_GL000219v1 4804 2.68% 6
chrUn_GL000220v1 529 0.33% 2
chrUn_KI270438v1 3322 2.95% 4
chrUn_KI270544v1 257 21.38% 1
chrUn_KI270756v1 378 0.47% 1
chrX 1096754 0.70% 912
chrY 1175 <0.01% 3
3320 contigs with no values (123783469 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30952 250 19140 1222.1 782
global segment-length histogram

Files

Filename Size md5
ENCFF912EBP.bed.gz 805.25 KB 1f42d22ba575a0712512bc2a8d4047a4
ENCFF912EBP.tabix.bed.gz 349.74 KB 9f8527489f6a69f6af11c8470da7777d
ENCFF912EBP.tabix.bed.gz.tbi 166.66 KB 9cdf3445bdbc72836b3c0a52355c792a
genomic_resource.yaml 3.11 KB d0289711f65a82469324745b1ca35ebb
statistics/