Resource
| Id | Histone_ChIP-seq/ENCSR630DSN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR630DSN [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN493UGD|/analyses/ENCAN493UGD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF374WKX|/files/ENCFF374WKX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF374WKX|/files/ENCFF374WKX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.74. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR630DSN | float |
Histone_ChIP-seq_ENCSR630DSN |
Histone_ChIP-seq ENCSR630DSN [biosample_summary="Homo sapiens heart right ventricle tissue male adult (61 years)" and target="H3K4me3"]
|
 |
[1.66, 46] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 37709578 | 1.17% | 22779 |
| chr1 | 3750235 | 1.51% | 2284 |
| chr2 | 2514592 | 1.04% | 1474 |
| chr3 | 2167610 | 1.09% | 1257 |
| chr4 | 1517221 | 0.80% | 888 |
| chr5 | 1833920 | 1.01% | 1062 |
| chr6 | 2172164 | 1.27% | 1291 |
| chr7 | 1854141 | 1.16% | 1142 |
| chr8 | 1442528 | 0.99% | 866 |
| chr9 | 1593820 | 1.15% | 987 |
| chr10 | 1630837 | 1.22% | 969 |
| chr11 | 2029074 | 1.50% | 1202 |
| chr12 | 1976888 | 1.48% | 1154 |
| chr13 | 790110 | 0.69% | 462 |
| chr14 | 1187285 | 1.11% | 712 |
| chr15 | 1220163 | 1.20% | 741 |
| chr16 | 1476299 | 1.63% | 918 |
| chr17 | 2184578 | 2.62% | 1324 |
| chr18 | 678265 | 0.84% | 399 |
| chr19 | 2374945 | 4.05% | 1568 |
| chr20 | 971449 | 1.51% | 598 |
| chr21 | 344094 | 0.74% | 218 |
| chr22 | 864903 | 1.70% | 536 |
| chrX | 1094192 | 0.70% | 706 |
| chrY | 40265 | 0.07% | 21 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 22779 | 230 | 14911 | 1655.45 | 1493 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF049VHE.bed.gz | 626.25 KB | 4353334b5b6788dc908d51d4f5234ab5 |
| ENCFF049VHE.tabix.bed.gz | 267.7 KB | a0c2794c4dbb73f25708d936299160ba |
| ENCFF049VHE.tabix.bed.gz.tbi | 151.14 KB | d6c8995117240b14a9dafe1e8d803982 |
| genomic_resource.yaml | 2.79 KB | d66911324970057da79fbb88ca9058ab |
| statistics/ |