Resource
| Id | Histone_ChIP-seq/ENCSR621XWM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR621XWM [biosample_summary="Homo sapiens T-cell" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 3 summary: output_type: replicated peaks audit_error: Processed redacted alignments file {ENCFF426ISS|/files/ENCFF426ISS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 2629549 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_error: Processed redacted alignments file {ENCFF179YTT|/files/ENCFF179YTT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 2807909 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN321GGQ|/analyses/ENCAN321GGQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR621XWM | float |
Histone_ChIP-seq_ENCSR621XWM |
Histone_ChIP-seq ENCSR621XWM [biosample_summary="Homo sapiens T-cell" and target="H3K36me3"]
|
 |
[2.05, 11.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 24078286 | 0.75% | 57814 |
| chr1 | 2185388 | 0.88% | 5288 |
| chr2 | 1693020 | 0.70% | 4193 |
| chr3 | 1326965 | 0.67% | 3270 |
| chr4 | 707497 | 0.37% | 1716 |
| chr5 | 976937 | 0.54% | 2398 |
| chr6 | 984154 | 0.58% | 2439 |
| chr7 | 1163791 | 0.73% | 2775 |
| chr8 | 771451 | 0.53% | 1916 |
| chr9 | 1037408 | 0.75% | 2489 |
| chr10 | 951347 | 0.71% | 2364 |
| chr11 | 1242111 | 0.92% | 2951 |
| chr12 | 1284672 | 0.96% | 3093 |
| chr13 | 423436 | 0.37% | 1064 |
| chr14 | 794747 | 0.74% | 1900 |
| chr15 | 708011 | 0.69% | 1767 |
| chr16 | 1430945 | 1.58% | 3359 |
| chr17 | 1649272 | 1.98% | 3909 |
| chr18 | 352604 | 0.44% | 837 |
| chr19 | 2105218 | 3.59% | 4631 |
| chr20 | 832357 | 1.29% | 1985 |
| chr21 | 363465 | 0.78% | 848 |
| chr22 | 896398 | 1.76% | 2114 |
| chr22_KI270733v1_random | 188 | 0.10% | 1 |
| chrX | 196904 | 0.13% | 507 |
| 3342 contigs with no values (186124728 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 57814 | 185 | 3238 | 416.48 | 364 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF525LUE.bed.gz | 952.13 KB | 14de38dec49c8a62e08670a0f4e16c81 |
| ENCFF525LUE.tabix.bed.gz | 520.34 KB | 8021c4fe8dd6660428cf874808720a43 |
| ENCFF525LUE.tabix.bed.gz.tbi | 166.0 KB | 04158ffba5360c66deb25a45b243b474 |
| genomic_resource.yaml | 2.45 KB | 90c373ea2243ba46b8c203395cd194e1 |
| statistics/ |