Resource
| Id | Histone_ChIP-seq/ENCSR621MTP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR621MTP [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (37 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN014WCS|/analyses/ENCAN014WCS/} has in progress subobject document {ba8e9633-00c7-4437-9be9-b43ea446e90c|/documents/ba8e9633-00c7-4437-9be9-b43ea446e90c/} audit_internal_action: Released analysis {ENCAN014WCS|/analyses/ENCAN014WCS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF006WFO|/files/ENCFF006WFO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF006WFO|/files/ENCFF006WFO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.87. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR621MTP | float |
Histone_ChIP-seq_ENCSR621MTP |
Histone_ChIP-seq ENCSR621MTP [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (37 years)" and target="H3K4me3"]
|
 |
[1.97, 104] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 51445159 | 1.60% | 29020 |
| chr1 | 5092497 | 2.05% | 2847 |
| chr2 | 3514343 | 1.45% | 1981 |
| chr3 | 2870784 | 1.45% | 1578 |
| chr4 | 2076810 | 1.09% | 1167 |
| chr5 | 2398753 | 1.32% | 1362 |
| chr6 | 2864119 | 1.68% | 1605 |
| chr7 | 2567395 | 1.61% | 1483 |
| chr8 | 1930896 | 1.33% | 1124 |
| chr9 | 2223283 | 1.61% | 1285 |
| chr10 | 2272888 | 1.70% | 1342 |
| chr11 | 2747286 | 2.03% | 1473 |
| chr12 | 2670644 | 2.00% | 1425 |
| chr13 | 1074802 | 0.94% | 626 |
| chr14 | 1636978 | 1.53% | 879 |
| chr15 | 1669892 | 1.64% | 950 |
| chr16 | 2001160 | 2.22% | 1164 |
| chr17 | 2993666 | 3.60% | 1630 |
| chr18 | 861299 | 1.07% | 525 |
| chr19 | 3285908 | 5.61% | 1911 |
| chr20 | 1393333 | 2.16% | 797 |
| chr21 | 498354 | 1.07% | 305 |
| chr22 | 1201856 | 2.36% | 697 |
| chrX | 1546989 | 0.99% | 838 |
| chrY | 51224 | 0.09% | 26 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 29020 | 230 | 24172 | 1772.75 | 1492 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF659CVN.bed.gz | 785.1 KB | 39a0addbe10091990e5ca51035ec2542 |
| ENCFF659CVN.tabix.bed.gz | 338.0 KB | dea4a12d9cd2a1538576ccb344b977e1 |
| ENCFF659CVN.tabix.bed.gz.tbi | 180.25 KB | 0702898df2678c8b331cd69206f80a2e |
| genomic_resource.yaml | 3.03 KB | 855465c43e68a0d891d37034bf1d8363 |
| statistics/ |