Resource
| Id | Histone_ChIP-seq/ENCSR621ECQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR621ECQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (55 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN022SYI|/analyses/ENCAN022SYI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed unfiltered alignments file {ENCFF275AEI|/files/ENCFF275AEI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 39116561 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF280WHW|/files/ENCFF280WHW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF280WHW|/files/ENCFF280WHW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.84. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR621ECQ | float |
Histone_ChIP-seq_ENCSR621ECQ |
Histone_ChIP-seq ENCSR621ECQ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K9me3"]
|
 |
[1.8, 11.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 18065707 | 0.56% | 27211 |
| chr1 | 1180905 | 0.47% | 1867 |
| chr2 | 1374303 | 0.57% | 2275 |
| chr3 | 1105531 | 0.56% | 1828 |
| chr4 | 1121175 | 0.59% | 1769 |
| chr5 | 1268199 | 0.70% | 1985 |
| chr6 | 947718 | 0.55% | 1623 |
| chr7 | 1071834 | 0.67% | 1651 |
| chr8 | 938969 | 0.65% | 1511 |
| chr9 | 721957 | 0.52% | 1107 |
| chr10 | 812562 | 0.61% | 1246 |
| chr11 | 813486 | 0.60% | 1308 |
| chr12 | 1033518 | 0.78% | 1506 |
| chr13 | 508030 | 0.44% | 889 |
| chr14 | 515944 | 0.48% | 851 |
| chr15 | 525936 | 0.52% | 785 |
| chr16 | 511597 | 0.57% | 734 |
| chr17 | 312515 | 0.38% | 476 |
| chr18 | 386947 | 0.48% | 629 |
| chr19 | 2170183 | 3.70% | 1932 |
| chr20 | 266790 | 0.41% | 446 |
| chr21 | 237631 | 0.51% | 383 |
| chr22 | 168894 | 0.33% | 275 |
| chrX | 65288 | 0.04% | 125 |
| chrY | 5795 | 0.01% | 10 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 27211 | 185 | 25768 | 663.91 | 512 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF783WEE.bed.gz | 549.41 KB | 71c59986ba245681576a098337be88f1 |
| ENCFF783WEE.tabix.bed.gz | 278.42 KB | 0aba7a3064e48582552955215789523c |
| ENCFF783WEE.tabix.bed.gz.tbi | 161.42 KB | 7a15ac3958d29602f33ac7a6fef47acd |
| genomic_resource.yaml | 3.28 KB | ecd6e69b4f86357d89d27776b1e5d65e |
| statistics/ |