Resource

Id Histone_ChIP-seq/ENCSR619AAKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR619AAK [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K79me2"]
Description
Labels
  • accession: ENCSR619AAK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (62 years)
  • date_created: 2014-02-20T05:41:52.699850+00:00
  • date_released: 2017-12-01
  • doi: 10.17989/ENCSR619AAK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (62 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H3K79me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR619AAK float

Histone_ChIP-seq_ENCSR619AAK
Histone_ChIP-seq ENCSR619AAK [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K79me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR619AAK [1.92, 9.55]
n
10,802,896
mean
4.24
sd
0.898

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 108028960.34% 20363
chr1 1113053 0.45% 2096
chr2 945220 0.39% 1730
chr3 822261 0.41% 1555
chr4 498641 0.26% 943
chr5 729324 0.40% 1307
chr6 805502 0.47% 1434
chr7 525091 0.33% 999
chr8 438794 0.30% 797
chr9 435082 0.31% 773
chr10 716141 0.54% 1320
chr11 152127 0.11% 359
chr12 713681 0.54% 1322
chr13 192833 0.17% 396
chr14 379560 0.35% 712
chr15 248329 0.24% 524
chr16 335260 0.37% 660
chr17 481462 0.58% 948
chr18 213352 0.27% 413
chr19 332937 0.57% 669
chr20 364112 0.57% 664
chr21 82629 0.18% 156
chr22 233776 0.46% 464
chrX 40796 0.03% 115
chrY 2933 0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20363 200 4254 530.52 458
global segment-length histogram

Files

Filename Size md5
ENCFF780YKA.bed.gz 387.4 KB 6e45cc4e16a94a0dab10ce9159b3c6cd
ENCFF780YKA.tabix.bed.gz 202.09 KB 50d1b4fa67096086b844394128047d2f
ENCFF780YKA.tabix.bed.gz.tbi 88.29 KB d5b982da2a40bae34c0680c599a0c19d
genomic_resource.yaml 2.54 KB c02a5e4e391a38b9d2d484b5d42fbbd4
statistics/