Resource

Id Histone_ChIP-seq/ENCSR617SRMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR617SRM [biosample_summary="Homo sapiens lung tissue female embryo (120 days)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR617SRM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue female embryo (120 days)
  • date_created: 2015-09-15T19:52:11.498313+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR617SRM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment: As of June 22, 2017, this experiment's biosample (and donor) has been changed. A SNP-analysis shows that the original donor (ENCDO308YQF) was incorrect. 10/27/17: Control biosample.summary does not match Experiment (former control: ENCSR724XIL).
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR617SRM float

Histone_ChIP-seq_ENCSR617SRM
Histone_ChIP-seq ENCSR617SRM [biosample_summary="Homo sapiens lung tissue female embryo (120 days)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR617SRM [1.78, 23.1]
n
53,637,485
mean
5.3
sd
1.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 536374851.67% 102408
chr1 4691708 1.88% 8853
chr2 4922040 2.03% 9208
chr3 3895793 1.96% 7436
chr4 2535672 1.33% 5057
chr5 3292208 1.81% 6298
chr6 3099091 1.81% 6076
chr7 2448408 1.54% 4806
chr8 2548184 1.76% 4969
chr9 2728483 1.97% 5034
chr10 3205037 2.40% 5964
chr11 2848195 2.11% 5300
chr12 2382851 1.79% 4723
chr13 1539803 1.35% 3025
chr14 1813171 1.69% 3370
chr15 1958709 1.92% 3646
chr16 1644449 1.82% 3088
chr17 2228201 2.68% 4118
chr18 1562195 1.94% 2849
chr19 1004632 1.71% 2064
chr20 1478288 2.29% 2741
chr21 499406 1.07% 1050
chr22 920683 1.81% 1734
chrX 390278 0.25% 999
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 102408 155 4879 523.76 430
global segment-length histogram

Files

Filename Size md5
ENCFF186ISV.bed.gz 2.0 MB fdea0b0dbef171d79d47e17e13fb015c
ENCFF186ISV.tabix.bed.gz 1010.64 KB bcfceb96439939dabe2ba09485f08571
ENCFF186ISV.tabix.bed.gz.tbi 325.37 KB dfe77fd823243b24bd88803b4385c023
genomic_resource.yaml 2.45 KB b37bcee7c35053615261a6c748ca326a
statistics/