Resource
| Id | Histone_ChIP-seq/ENCSR615YKN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR615YKN [biosample_summary="Homo sapiens UCSF-4" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN687CZE|/analyses/ENCAN687CZE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF294ILE|/files/ENCFF294ILE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 29903749 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF911BTN|/files/ENCFF911BTN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24905666 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR615YKN | float |
Histone_ChIP-seq_ENCSR615YKN |
Histone_ChIP-seq ENCSR615YKN [biosample_summary="Homo sapiens UCSF-4" and target="H3K4me1"]
|
 |
[1.75, 16.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 115148740 | 3.58% | 198978 |
| chr1 | 11621704 | 4.67% | 18927 |
| chr1_KI270713v1_random | 1912 | 4.69% | 4 |
| chr1_KI270714v1_random | 206 | 0.49% | 1 |
| chr2 | 8458459 | 3.49% | 15344 |
| chr3 | 6623969 | 3.34% | 12396 |
| chr4 | 4148628 | 2.18% | 8210 |
| chr5 | 5665481 | 3.12% | 10419 |
| chr6 | 6075581 | 3.56% | 11175 |
| chr7 | 5783429 | 3.63% | 10460 |
| chr8 | 4631815 | 3.19% | 8580 |
| chr9 | 5237769 | 3.78% | 8841 |
| chr10 | 5713392 | 4.27% | 9899 |
| chr11 | 6829467 | 5.06% | 10963 |
| chr12 | 5914082 | 4.44% | 9698 |
| chr13 | 2524041 | 2.21% | 4958 |
| chr14 | 3719231 | 3.47% | 6318 |
| chr15 | 4145508 | 4.06% | 6939 |
| chr16 | 4725042 | 5.23% | 7526 |
| chr17 | 6459471 | 7.76% | 9581 |
| chr17_GL000205v2_random | 2651 | 1.43% | 7 |
| chr18 | 2450839 | 3.05% | 4768 |
| chr19 | 4712094 | 8.04% | 7286 |
| chr20 | 3643928 | 5.65% | 5983 |
| chr21 | 1224683 | 2.62% | 2189 |
| chr22 | 3300057 | 6.49% | 4998 |
| chr22_KI270733v1_random | 896 | 0.50% | 4 |
| chrUn_GL000195v1 | 4705 | 2.57% | 11 |
| chrUn_GL000219v1 | 238 | 0.13% | 1 |
| chrUn_GL000220v1 | 308 | 0.19% | 1 |
| chrX | 1529154 | 0.98% | 3491 |
| 3336 contigs with no values (185332779 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 198978 | 175 | 9245 | 578.7 | 426 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF251UPB.bed.gz | 3.97 MB | 652916eff76f375acfb191c68868f532 |
| ENCFF251UPB.tabix.bed.gz | 1.94 MB | 751dcace36455a71366743716b9c0fa7 |
| ENCFF251UPB.tabix.bed.gz.tbi | 461.24 KB | 814d0a796b930c57b203df24b896e5c4 |
| genomic_resource.yaml | 2.39 KB | 6091eeb71ee6b84cd99df6c51596ec99 |
| statistics/ |