Resource

Id Histone_ChIP-seq/ENCSR612MZBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR612MZB [biosample_summary="Homo sapiens trophoblast tissue female embryo (20 weeks)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR612MZB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000088/
  • biosample_summary: Homo sapiens trophoblast tissue female embryo (20 weeks)
  • date_created: 2017-03-22T16:17:04.588525+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR612MZB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (20 weeks)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR612MZB float

Histone_ChIP-seq_ENCSR612MZB
Histone_ChIP-seq ENCSR612MZB [biosample_summary="Homo sapiens trophoblast tissue female embryo (20 weeks)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR612MZB [1.51, 25.7]
n
45,611,056
mean
5.64
sd
1.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 456110561.42% 67722
chr1 1538958 0.62% 2298
chr1_KI270708v1_random 785 0.61% 1
chr1_KI270709v1_random 2263 3.38% 1
chr2 2365740 0.98% 3687
chr3 1914249 0.97% 2988
chr4 2587497 1.36% 3974
chr4_GL000008v2_random 4811 2.29% 2
chr5 2393708 1.32% 3588
chr5_GL000208v1_random 3394 3.66% 6
chr6 1437039 0.84% 2214
chr7 3196986 2.01% 4239
chr8 2758013 1.90% 4368
chr9 1055706 0.76% 1584
chr9_KI270719v1_random 1867 1.06% 4
chr9_KI270720v1_random 6070 15.54% 5
chr10 1914678 1.43% 2957
chr11 1675531 1.24% 2558
chr12 2286369 1.72% 3178
chr13 1733940 1.52% 2737
chr14 1334270 1.25% 2076
chr14_GL000009v2_random 2287 1.13% 5
chr14_GL000194v1_random 2705 1.41% 5
chr14_GL000225v1_random 30843 14.61% 46
chr14_KI270722v1_random 15531 8.00% 21
chr14_KI270723v1_random 2438 6.40% 4
chr14_KI270724v1_random 3651 9.23% 6
chr14_KI270725v1_random 2488 1.44% 5
chr15 1177275 1.15% 1670
chr16 2164878 2.40% 3105
chr17 912731 1.10% 1341
chr17_GL000205v2_random 39659 21.37% 15
chr17_KI270729v1_random 5807 2.07% 7
chr17_KI270730v1_random 17912 15.91% 17
chr18 1445960 1.80% 2286
chr19 2400121 4.09% 3109
chr20 1064011 1.65% 1600
chr21 906206 1.94% 1419
chr22 693619 1.36% 991
chr22_KI270732v1_random 3731 8.98% 5
chr22_KI270733v1_random 8623 4.80% 12
chr22_KI270735v1_random 7878 18.40% 10
chr22_KI270736v1_random 34095 18.74% 49
chr22_KI270738v1_random 1767 1.78% 3
chrM 7530 45.45% 9
chrUn_GL000214v1 2162 1.57% 5
chrUn_GL000216v2 3742 2.12% 9
chrUn_GL000218v1 1015 0.63% 2
chrUn_GL000219v1 12444 6.94% 6
chrUn_GL000220v1 403 0.25% 1
chrUn_GL000224v1 24885 13.85% 19
chrUn_KI270435v1 3180 3.42% 4
chrUn_KI270438v1 13280 11.80% 17
chrUn_KI270442v1 52214 13.32% 61
chrUn_KI270507v1 797 14.89% 1
chrUn_KI270508v1 1111 56.95% 1
chrUn_KI270511v1 342 4.21% 1
chrUn_KI270512v1 1051 4.63% 2
chrUn_KI270519v1 3661 2.65% 5
chrUn_KI270538v1 2182 2.39% 4
chrUn_KI270584v1 791 17.53% 1
chrUn_KI270589v1 3062 6.88% 1
chrUn_KI270591v1 939 16.20% 1
chrUn_KI270742v1 2122 1.14% 4
chrUn_KI270743v1 3304 1.57% 5
chrUn_KI270744v1 5068 3.01% 4
chrUn_KI270746v1 3668 5.52% 8
chrUn_KI270749v1 499 0.31% 1
chrUn_KI270750v1 3604 2.42% 6
chrUn_KI270751v1 4105 2.72% 7
chrUn_KI270753v1 757 1.20% 1
chrUn_KI270754v1 1625 4.04% 3
chrUn_KI270756v1 399 0.50% 1
chrUn_KI270757v1 2875 4.04% 3
chrX 6257010 4.01% 9294
chrY 35139 0.06% 39
3291 contigs with no values (122913663 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 67722 235 37445 673.5 556.5
global segment-length histogram

Files

Filename Size md5
ENCFF335ZGF.bed.gz 1.23 MB 63de9b33c8edfb04402658b641ed6c4d
ENCFF335ZGF.tabix.bed.gz 639.64 KB bf6c45dd2504be65be28a028fd33af0a
ENCFF335ZGF.tabix.bed.gz.tbi 250.68 KB c70bdd40c7d830f1e0a0c8445b9d4fee
genomic_resource.yaml 2.01 KB d8d493042434433fe9b07334d0745667
statistics/