Resource

Id Histone_ChIP-seq/ENCSR612GKPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR612GKP [biosample_summary="Homo sapiens spleen tissue female adult (41 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR612GKP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002106/
  • biosample_summary: Homo sapiens spleen tissue female adult (41 years)
  • date_created: 2020-05-01T03:07:21.375326+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR612GKP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR612GKP float

Histone_ChIP-seq_ENCSR612GKP
Histone_ChIP-seq ENCSR612GKP [biosample_summary="Homo sapiens spleen tissue female adult (41 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR612GKP [1.62, 49.9]
n
38,903,320
mean
16.2
sd
8.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 389033201.21% 24034
chr1 3869113 1.55% 2376
chr2 2653269 1.10% 1596
chr3 2147782 1.08% 1300
chr4 1486338 0.78% 871
chr5 1855061 1.02% 1065
chr6 2273547 1.33% 1336
chr7 1909156 1.20% 1209
chr8 1408622 0.97% 867
chr9 1597589 1.15% 1023
chr10 1672484 1.25% 1042
chr11 2150545 1.59% 1270
chr12 2047770 1.54% 1240
chr13 783704 0.69% 498
chr14 1295056 1.21% 795
chr15 1256136 1.23% 784
chr16 1514207 1.68% 972
chr17 2359858 2.83% 1421
chr18 622057 0.77% 420
chr19 2590632 4.42% 1696
chr20 1025611 1.59% 674
chr21 379409 0.81% 243
chr22 904192 1.78% 579
chrX 1101182 0.71% 757
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 24034 221 13259 1618.68 1409
global segment-length histogram

Files

Filename Size md5
ENCFF602PIX.bed.gz 571.6 KB 757a17f60c593d529a06489c142b2a1d
ENCFF602PIX.tabix.bed.gz 266.19 KB d17773248ef7824c5b9354435654609c
ENCFF602PIX.tabix.bed.gz.tbi 148.69 KB 77daa3ae2b2acc3b77c66098005359e5
genomic_resource.yaml 1.71 KB e056abd9ae5162d431ef544f15d70e35
statistics/