Resource

Id Histone_ChIP-seq/ENCSR605NNZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR605NNZ [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (49 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR605NNZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0014455/
  • biosample_summary: Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (49 years)
  • date_created: 2015-09-15T19:52:45.743705+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR605NNZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (49 years) nuclear fraction
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR605NNZ float

Histone_ChIP-seq_ENCSR605NNZ
Histone_ChIP-seq ENCSR605NNZ [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (49 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR605NNZ [1.78, 89.5]
n
49,491,082
mean
26
sd
18.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 494910821.54% 44651
chr1 4634586 1.86% 4052
chr2 3328978 1.37% 2994
chr3 2848682 1.44% 2391
chr4 2102911 1.11% 1848
chr5 2472245 1.36% 2094
chr6 2905830 1.70% 2448
chr7 2481194 1.56% 2274
chr8 1860548 1.28% 1697
chr9 2039268 1.47% 1885
chr10 2229813 1.67% 2073
chr11 2585869 1.91% 2262
chr12 2765297 2.07% 2357
chr13 1085923 0.95% 1006
chr14 1526384 1.43% 1302
chr15 1605954 1.57% 1381
chr16 1733199 1.92% 1670
chr17 2635595 3.17% 2419
chr18 874420 1.09% 872
chr19 3746683 6.39% 3854
chr20 1155039 1.79% 1059
chr21 512473 1.10% 509
chr22 976546 1.92% 896
chrX 1383325 0.89% 1307
chrY 320 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44651 175 12752 1108.4 733
global segment-length histogram

Files

Filename Size md5
ENCFF591SLF.bed.gz 1008.21 KB d2f3b91faa02f4623b2a33e179046d81
ENCFF591SLF.tabix.bed.gz 469.56 KB 8747a1377ff79fe78fa1965a556c2bd3
ENCFF591SLF.tabix.bed.gz.tbi 214.62 KB be4bbe61c1dc1d509975b0c19e893e1f
genomic_resource.yaml 1.67 KB 38970869b445ace35abcb4455ff7087c
statistics/