Resource

Id Histone_ChIP-seq/ENCSR604JFHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR604JFH [biosample_summary="Homo sapiens OCI-LY3" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR604JFH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0006710/
  • biosample_summary: Homo sapiens OCI-LY3
  • date_created: 2014-02-20T05:43:00.902779+00:00
  • date_released: 2014-07-11
  • doi: 10.17989/ENCSR604JFH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR604JFH float

Histone_ChIP-seq_ENCSR604JFH
Histone_ChIP-seq ENCSR604JFH [biosample_summary="Homo sapiens OCI-LY3" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR604JFH [1.59, 7.98]
n
19,085,302
mean
3.53
sd
0.778

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 190853020.59% 29773
chr1 1354642 0.54% 2043
chr2 1376800 0.57% 2256
chr3 1509074 0.76% 2413
chr4 1589967 0.84% 2506
chr5 381855 0.21% 662
chr6 688516 0.40% 1135
chr7 868849 0.55% 1427
chr8 864026 0.60% 1387
chr9 631229 0.46% 979
chr10 215874 0.16% 373
chr11 953512 0.71% 1479
chr12 1155637 0.87% 1819
chr13 953573 0.83% 1582
chr14 635344 0.59% 1050
chr15 515962 0.51% 772
chr16 468551 0.52% 689
chr17 362791 0.44% 554
chr18 1089166 1.36% 1588
chr19 2197175 3.75% 3089
chr20 553634 0.86% 811
chr21 182457 0.39% 297
chr22 283180 0.56% 414
chrX 205230 0.13% 370
chrY 48258 0.08% 78
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29773 183 10086 641.03 525
global segment-length histogram

Files

Filename Size md5
ENCFF171UFG.bed.gz 657.63 KB 36cda73dedfbcd5fd958b3068ea902b5
ENCFF171UFG.tabix.bed.gz 311.88 KB 3a877532e333b4d931511a4c1b8e3d3f
ENCFF171UFG.tabix.bed.gz.tbi 149.53 KB 7e476a6b576e3e75100e3025da3fae4b
genomic_resource.yaml 2.11 KB a415aea1b9029df5717eda3a31f8a82c
statistics/