Resource

Id Histone_ChIP-seq/ENCSR601VHOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR601VHO [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (51 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR601VHO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0011907/
  • biosample_summary: Homo sapiens gastrocnemius medialis tissue female adult (51 years)
  • date_created: 2017-12-06T21:06:20.849909+00:00
  • date_released: 2018-12-19
  • doi: 10.17989/ENCSR601VHO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR601VHO float

Histone_ChIP-seq_ENCSR601VHO
Histone_ChIP-seq ENCSR601VHO [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (51 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR601VHO [1.47, 61.5]
n
144,240,024
mean
17.4
sd
12.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1442400244.48% 63804
chr1 14812274 5.95% 6199
chr1_KI270713v1_random 1006 2.47% 2
chr2 11225085 4.63% 5115
chr3 9876786 4.98% 4365
chr3_GL000221v1_random 258 0.17% 1
chr4 5457796 2.87% 2530
chr5 7343961 4.05% 3191
chr6 8865383 5.19% 3995
chr7 6770816 4.25% 3112
chr8 5888202 4.06% 2674
chr9 6057921 4.38% 2813
chr10 8047935 6.02% 3368
chr11 6684435 4.95% 2956
chr11_KI270721v1_random 392 0.39% 1
chr12 6908726 5.18% 3010
chr13 3262860 2.85% 1574
chr14 4593257 4.29% 2069
chr15 5031444 4.93% 2239
chr16 5299671 5.87% 2389
chr17 7970620 9.57% 3229
chr17_GL000205v2_random 392 0.21% 1
chr18 2520113 3.14% 1197
chr19 5708754 9.74% 2365
chr20 3856477 5.98% 1733
chr21 1532159 3.28% 723
chr22 3588446 7.06% 1458
chrM 10859 65.54% 5
chrUn_GL000195v1 2269 1.24% 3
chrUn_GL000219v1 1845 1.03% 1
chrX 2919882 1.87% 1486
3336 contigs with no values (185443788 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63804 222 174918 2260.67 1346
global segment-length histogram

Files

Filename Size md5
ENCFF730XHA.bed.gz 1.67 MB 83de27999570cfd0392fb25388d88836
ENCFF730XHA.tabix.bed.gz 725.01 KB 89d7652b7eb3a60a670e59aaec48672a
ENCFF730XHA.tabix.bed.gz.tbi 206.83 KB 4bdcf6c6334413ee1e2f7c8d674a4694
genomic_resource.yaml 1.55 KB 45db7612e3f5ec6bbe8a12a84a2bab29
statistics/