Resource

Id Histone_ChIP-seq/ENCSR597ULVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR597ULV [biosample_summary="Homo sapiens VCaP" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR597ULV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007752/
  • biosample_summary: Homo sapiens VCaP
  • date_created: 2017-03-17T23:54:43.813220+00:00
  • date_released: 2017-04-03
  • doi: 10.17989/ENCSR597ULV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: ENCFF247ECT and ENCFF817BNT were revoked because the flowcell was found to be bad. ENCFF437EXK and ENCFF455NHN are their replacements. The original processed files were revoked and will be re-processed with the replacement data.
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR597ULV float

Histone_ChIP-seq_ENCSR597ULV
Histone_ChIP-seq ENCSR597ULV [biosample_summary="Homo sapiens VCaP" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR597ULV [1.26, 132]
n
179,750,046
mean
16
sd
14.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1797500465.59% 82515
chr1 16808936 6.75% 7706
chr1_KI270711v1_random 616 1.46% 1
chr1_KI270713v1_random 4035 9.90% 2
chr2 13854650 5.72% 6577
chr3 12429466 6.27% 5815
chr4 8884221 4.67% 4117
chr5 9717212 5.35% 4593
chr6 9661601 5.66% 4434
chr7 9721216 6.10% 4580
chr8 8219721 5.66% 3693
chr9 8283744 5.99% 3834
chr9_KI270718v1_random 765 2.01% 1
chr10 7932614 5.93% 3791
chr11 9808403 7.26% 4225
chr12 9215619 6.91% 4153
chr13 4521243 3.95% 2158
chr14 5682475 5.31% 2623
chr14_GL000194v1_random 711 0.37% 1
chr15 6610456 6.48% 2878
chr15_KI270727v1_random 1387 0.31% 2
chr16 3951107 4.37% 1941
chr17 7964186 9.57% 3509
chr17_GL000205v2_random 1672 0.90% 2
chr18 3681494 4.58% 1796
chr19 6395964 10.91% 2652
chr20 5656387 8.78% 2488
chr21 3096259 6.63% 1276
chr22 3457764 6.80% 1531
chr22_KI270733v1_random 424 0.24% 1
chr22_KI270734v1_random 598 0.36% 1
chrUn_GL000195v1 6401 3.50% 7
chrUn_GL000218v1 1157 0.72% 1
chrUn_GL000219v1 2120 1.18% 1
chrUn_GL000220v1 600 0.37% 1
chrX 3820325 2.45% 1926
chrY 354497 0.62% 198
3330 contigs with no values (127100903 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82515 320 67579 2178.39 1613
global segment-length histogram

Files

Filename Size md5
ENCFF776KYJ.bed.gz 2.08 MB 3148cba2e0400d22ace5729983a15a06
ENCFF776KYJ.tabix.bed.gz 929.14 KB b80a18bf8f6787764b676bc1eba7cc5c
ENCFF776KYJ.tabix.bed.gz.tbi 318.92 KB c30e8d10e548ddb1d7179e78f7f4d2d2
genomic_resource.yaml 1.6 KB 84d602e2a673a7f62ac362f11bc4ffb7
statistics/