Resource
| Id | Histone_ChIP-seq/ENCSR596NOF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR596NOF [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN565EVS|/analyses/ENCAN565EVS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF574OYF|/files/ENCFF574OYF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF574OYF|/files/ENCFF574OYF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.60. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR596NOF | float |
Histone_ChIP-seq_ENCSR596NOF |
Histone_ChIP-seq ENCSR596NOF [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K4me3"]
|
 |
[1.78, 31.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 32401700 | 1.01% | 30689 |
| chr1 | 3141040 | 1.26% | 2893 |
| chr2 | 2395069 | 0.99% | 2234 |
| chr3 | 1984143 | 1.00% | 1841 |
| chr4 | 1435332 | 0.75% | 1367 |
| chr5 | 1622759 | 0.89% | 1457 |
| chr6 | 2022496 | 1.18% | 1934 |
| chr7 | 1511323 | 0.95% | 1441 |
| chr8 | 1224904 | 0.84% | 1173 |
| chr9 | 1334211 | 0.96% | 1275 |
| chr10 | 1461016 | 1.09% | 1387 |
| chr11 | 1701196 | 1.26% | 1576 |
| chr12 | 1816218 | 1.36% | 1623 |
| chr13 | 769384 | 0.67% | 772 |
| chr14 | 1055957 | 0.99% | 967 |
| chr15 | 1079354 | 1.06% | 1025 |
| chr16 | 1173547 | 1.30% | 1124 |
| chr17 | 1690939 | 2.03% | 1640 |
| chr17_GL000205v2_random | 1672 | 0.90% | 2 |
| chr18 | 574948 | 0.72% | 576 |
| chr19 | 1697511 | 2.90% | 1704 |
| chr20 | 730292 | 1.13% | 753 |
| chr21 | 340777 | 0.73% | 326 |
| chr22 | 651844 | 1.28% | 649 |
| chrUn_GL000195v1 | 636 | 0.35% | 1 |
| chrUn_GL000219v1 | 3127 | 1.74% | 5 |
| chrX | 947233 | 0.61% | 922 |
| chrY | 34772 | 0.06% | 22 |
| 3339 contigs with no values (128529400 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 30689 | 195 | 17395 | 1055.81 | 711 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF116OPY.bed.gz | 774.39 KB | d78b02887ecd91109db458ab2570d6cd |
| ENCFF116OPY.tabix.bed.gz | 348.38 KB | f5dd21aab7fb99a6167cc10f3e6ac8d4 |
| ENCFF116OPY.tabix.bed.gz.tbi | 162.05 KB | 3ea2ea7a6a83e8c8ce94c9c3a7d775fd |
| genomic_resource.yaml | 2.77 KB | 653c3824b3253553059c17b84d4e5c8e |
| statistics/ |