Resource

Id Histone_ChIP-seq/ENCSR592JNNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR592JNN [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K23ac"]
Description
Labels
  • accession: ENCSR592JNN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000351/
  • biosample_summary: Homo sapiens trophoblast cell originated from H1
  • date_created: 2015-10-01T07:16:35.249771+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR592JNN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K23ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR592JNN float

Histone_ChIP-seq_ENCSR592JNN
Histone_ChIP-seq ENCSR592JNN [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K23ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR592JNN [1.39, 6.11]
n
3,764,577
mean
2.74
sd
0.472

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 37645770.12% 21312
chr1 332742 0.13% 1884
chr2 333037 0.14% 1895
chr3 245276 0.12% 1422
chr4 191233 0.10% 1107
chr4_GL000008v2_random 540 0.26% 3
chr5 230030 0.13% 1328
chr6 227004 0.13% 1321
chr7 217559 0.14% 1263
chr8 206775 0.14% 1175
chr9 175275 0.13% 962
chr9_KI270718v1_random 242 0.64% 1
chr10 198397 0.15% 1128
chr11 169453 0.13% 948
chr12 187158 0.14% 1062
chr13 118684 0.10% 667
chr14 116929 0.11% 667
chr14_GL000225v1_random 139 0.07% 1
chr15 123054 0.12% 712
chr16 128980 0.14% 714
chr17 119650 0.14% 647
chr17_KI270730v1_random 320 0.28% 2
chr18 108459 0.13% 625
chr19 97721 0.17% 507
chr20 99437 0.15% 557
chr21 56146 0.12% 301
chr22 63832 0.13% 333
chr22_KI270736v1_random 1176 0.65% 6
chrUn_GL000195v1 152 0.08% 1
chrUn_GL000219v1 189 0.11% 1
chrUn_KI270438v1 260 0.23% 2
chrUn_KI270442v1 2049 0.52% 9
chrUn_KI270589v1 129 0.29% 1
chrUn_KI270591v1 269 4.64% 1
chrUn_KI270751v1 281 0.19% 1
chrX 11397 0.01% 55
chrY 603 <0.01% 3
3330 contigs with no values (127256006 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21312 120 1477 176.64 160
global segment-length histogram

Files

Filename Size md5
ENCFF360STR.bed.gz 419.86 KB e8dd6f3d023f5ff9c795b0c54dc0d8e3
ENCFF360STR.tabix.bed.gz 217.43 KB 9c60f8239191eaaab0bdd97212a8c464
ENCFF360STR.tabix.bed.gz.tbi 166.21 KB 239d214c44637e502fc15c456b65dd3b
genomic_resource.yaml 1.48 KB 321723223a0845200f084b432c510a1b
statistics/