Resource

Id Histone_ChIP-seq/ENCSR591KSNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR591KSN [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3F3A"]
Description
Labels
  • accession: ENCSR591KSN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0011020/
  • biosample_summary: Homo sapiens neural progenitor cell originated from H9
  • date_created: 2016-04-11T19:08:39.462985+00:00
  • date_released: 2016-11-14
  • doi: 10.17989/ENCSR591KSN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment: As of March 29th, 2017, GRCh38 assembly has been rerun for second replicate mapping and peak calling.
  • target: H3F3A

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR591KSN float

Histone_ChIP-seq_ENCSR591KSN
Histone_ChIP-seq ENCSR591KSN [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3F3A"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR591KSN [1.47, 17.9]
n
91,708,221
mean
3.96
sd
1.35

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 917082212.85% 90578
chr1 9142122 3.67% 9067
chr2 6940418 2.87% 6758
chr3 5289784 2.67% 5125
chr4 3916970 2.06% 3857
chr5 4999219 2.75% 4801
chr6 5192893 3.04% 4994
chr7 4433275 2.78% 4570
chr8 3365109 2.32% 3371
chr9 3857115 2.79% 3820
chr10 4217230 3.15% 4169
chr11 5086574 3.77% 4887
chr12 5189380 3.89% 4934
chr13 2272281 1.99% 2155
chr14 3225031 3.01% 3051
chr15 3018746 2.96% 2983
chr16 3177989 3.52% 3301
chr17 4991660 6.00% 4966
chr18 2131463 2.65% 2006
chr19 3712078 6.33% 4064
chr20 2558948 3.97% 2507
chr21 832880 1.78% 884
chr22 2045774 4.03% 2097
chrX 2111282 1.35% 2211
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 90578 190 25702 1012.48 747
global segment-length histogram

Files

Filename Size md5
ENCFF735XMI.bed.gz 2.1 MB 496d55502ea14d16c397fb2ac0a824a3
ENCFF735XMI.tabix.bed.gz 971.28 KB f6bdcb7e0c3dadb6bacdfc15aad1f860
ENCFF735XMI.tabix.bed.gz.tbi 309.08 KB e22a3417bcdeeec7bfd120c7148b56fe
genomic_resource.yaml 2.32 KB d5714fc2ba93ea6f195e260247fa4aa1
statistics/