Resource

Id Histone_ChIP-seq/ENCSR590NNJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR590NNJ [biosample_summary="Homo sapiens tibial nerve tissue male adult (54 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR590NNJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001323/
  • biosample_summary: Homo sapiens tibial nerve tissue male adult (54 years)
  • date_created: 2017-12-06T21:03:58.178819+00:00
  • date_released: 2019-02-12
  • doi: 10.17989/ENCSR590NNJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR590NNJ float

Histone_ChIP-seq_ENCSR590NNJ
Histone_ChIP-seq ENCSR590NNJ [biosample_summary="Homo sapiens tibial nerve tissue male adult (54 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR590NNJ [1.55, 10.1]
n
55,258,055
mean
3.5
sd
0.907

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 552580551.72% 61204
chr1 5765107 2.32% 6173
chr2 4183119 1.73% 4796
chr3 3330266 1.68% 3798
chr4 1663531 0.87% 2026
chr5 2534261 1.40% 2963
chr6 2766088 1.62% 3351
chr7 2360274 1.48% 2849
chr8 2002703 1.38% 2379
chr9 2712676 1.96% 2879
chr10 2963580 2.21% 3209
chr11 3407024 2.52% 3564
chr12 2650684 1.99% 2910
chr13 1106286 0.97% 1330
chr14 1974484 1.84% 2201
chr15 2032845 1.99% 2189
chr16 2265342 2.51% 2437
chr17 3777365 4.54% 3808
chr18 867315 1.08% 1056
chr19 2737784 4.67% 2777
chr20 1720349 2.67% 1824
chr21 536315 1.15% 680
chr22 1718564 3.38% 1747
chrX 181499 0.12% 256
chrY 594 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 61204 200 18848 902.85 709
global segment-length histogram

Files

Filename Size md5
ENCFF397INV.bed.gz 1.3 MB 1ad36ea8aa436649aafbeffe4268fa95
ENCFF397INV.tabix.bed.gz 641.5 KB e4d52ca1ad62c490696ecbec6cad620d
ENCFF397INV.tabix.bed.gz.tbi 208.54 KB cc96c96d4921f215ea5b2431c71b335a
genomic_resource.yaml 1.71 KB d5602a19d73dae8ecdc689ef5d11c6ff
statistics/