Resource

Id Histone_ChIP-seq/ENCSR589JCYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR589JCY [biosample_summary="Homo sapiens right lobe of liver tissue female adult (47 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR589JCY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue female adult (47 years)
  • date_created: 2022-05-11T01:53:47.901802+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR589JCY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR589JCY float

Histone_ChIP-seq_ENCSR589JCY
Histone_ChIP-seq ENCSR589JCY [biosample_summary="Homo sapiens right lobe of liver tissue female adult (47 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR589JCY [1.63, 9.84]
n
56,091,486
mean
3.85
sd
0.991

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 560914861.74% 57566
chr1 5679890 2.28% 5726
chr2 4379526 1.81% 4558
chr3 3812478 1.92% 3926
chr4 2222586 1.17% 2478
chr5 2818523 1.55% 2920
chr6 3000256 1.76% 3306
chr7 2635051 1.65% 2772
chr8 2401237 1.65% 2564
chr9 2894275 2.09% 2817
chr10 2745573 2.05% 2873
chr11 3135990 2.32% 3077
chr12 2815314 2.11% 2937
chr13 1226635 1.07% 1403
chr14 1803269 1.68% 1832
chr15 2026245 1.99% 2061
chr16 2309427 2.56% 2262
chr17 2860718 3.44% 2719
chr18 1162933 1.45% 1249
chr19 1952014 3.33% 1884
chr20 1676300 2.60% 1675
chr21 605153 1.30% 638
chr22 1604074 3.16% 1450
chrX 324019 0.21% 439
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 57566 230 21709 974.39 800
global segment-length histogram

Files

Filename Size md5
ENCFF189UID.bed.gz 1.22 MB f58bf9ab6659cf2122718cefd59e3291
ENCFF189UID.tabix.bed.gz 606.49 KB cace9f22971f9a670db2958d52425638
ENCFF189UID.tabix.bed.gz.tbi 206.14 KB 8398cbde9f1b927c8393362e104efac0
genomic_resource.yaml 1.53 KB 0288d15ec31ca6bd2bcfa6ae0a8c0f9d
statistics/