Resource
| Id | Histone_ChIP-seq/ENCSR589DBF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR589DBF [biosample_summary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (51 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN721JXZ|/analyses/ENCAN721JXZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF107JVE|/files/ENCFF107JVE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF107JVE|/files/ENCFF107JVE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.68. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR589DBF | float |
Histone_ChIP-seq_ENCSR589DBF |
Histone_ChIP-seq ENCSR589DBF [biosample_summary="Homo sapiens spleen tissue female adult (51 years)" and target="H3K4me3"]
|
 |
[1.45, 97.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53539544 | 1.66% | 27790 |
| chr1 | 5265868 | 2.12% | 2710 |
| chr2 | 3666753 | 1.51% | 1907 |
| chr3 | 2979277 | 1.50% | 1535 |
| chr4 | 2176264 | 1.14% | 1111 |
| chr5 | 2585121 | 1.42% | 1328 |
| chr6 | 3108976 | 1.82% | 1589 |
| chr7 | 2672561 | 1.68% | 1406 |
| chr8 | 1976714 | 1.36% | 1051 |
| chr9 | 2196188 | 1.59% | 1157 |
| chr10 | 2251234 | 1.68% | 1217 |
| chr11 | 2884892 | 2.14% | 1388 |
| chr12 | 2867389 | 2.15% | 1445 |
| chr13 | 1120497 | 0.98% | 618 |
| chr14 | 1735436 | 1.62% | 882 |
| chr15 | 1709733 | 1.68% | 891 |
| chr16 | 2039147 | 2.26% | 1078 |
| chr17 | 3084293 | 3.70% | 1547 |
| chr18 | 890322 | 1.11% | 502 |
| chr19 | 3501913 | 5.97% | 1852 |
| chr20 | 1368513 | 2.12% | 718 |
| chr21 | 574037 | 1.23% | 309 |
| chr22 | 1247334 | 2.45% | 662 |
| chrX | 1636168 | 1.05% | 886 |
| chrY | 914 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 27790 | 297 | 30148 | 1926.58 | 1602 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF774LJL.bed.gz | 800.35 KB | 8263c69b74649fd5170c274da644e406 |
| ENCFF774LJL.tabix.bed.gz | 330.07 KB | 4f3fc2402198052dd41abddaf61c6e89 |
| ENCFF774LJL.tabix.bed.gz.tbi | 174.81 KB | be14868a9498fd2343b9aa67daceaead |
| genomic_resource.yaml | 2.74 KB | a52fb1284eacb65ff35a6461bb61a270 |
| statistics/ |