Resource

Id Histone_ChIP-seq/ENCSR580RIQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR580RIQ [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR580RIQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-08-25T18:07:34.654849+00:00
  • date_released: 2021-09-21
  • doi: 10.17989/ENCSR580RIQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR580RIQ float

Histone_ChIP-seq_ENCSR580RIQ
Histone_ChIP-seq ENCSR580RIQ [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR580RIQ [1.77, 46.6]
n
52,278,112
mean
17.7
sd
9.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 522781121.62% 33697
chr1 5070053 2.04% 3219
chr2 3658433 1.51% 2378
chr3 3159081 1.59% 1953
chr4 2180920 1.15% 1390
chr5 2711953 1.49% 1699
chr6 3080093 1.80% 2004
chr7 2540110 1.59% 1734
chr8 2115860 1.46% 1359
chr9 2136035 1.54% 1425
chr10 2258841 1.69% 1471
chr11 2812209 2.08% 1721
chr12 2767500 2.08% 1686
chr13 1231748 1.08% 825
chr14 1673310 1.56% 1013
chr15 1638636 1.61% 1055
chr16 1971654 2.18% 1342
chr17 2787031 3.35% 1799
chr18 1013834 1.26% 680
chr19 3025401 5.16% 1986
chr20 1296793 2.01% 864
chr21 511356 1.09% 361
chr22 1137582 2.24% 750
chrX 1499679 0.96% 983
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33697 215 24561 1551.42 1133
global segment-length histogram

Files

Filename Size md5
ENCFF350LHB.bed.gz 846.21 KB ce5edf9f94c7caa32f11bcb9e3d1f52d
ENCFF350LHB.tabix.bed.gz 379.9 KB a02913ab97bb0a85aeaad408cd27577b
ENCFF350LHB.tabix.bed.gz.tbi 191.95 KB d95045f5f126fb7b705c02fa66a3d33f
genomic_resource.yaml 1.61 KB 5836825a718c2badf1396713785b51d9
statistics/