Resource
| Id | Histone_ChIP-seq/ENCSR580LZO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR580LZO [biosample_summary="Homo sapiens IMR-90" and target="H3K9me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN638EBB|/analyses/ENCAN638EBB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN638EBB|/analyses/ENCAN638EBB/} has in progress subobject document {281dc686-70d7-484a-a9b3-afbbefabc85a|/documents/281dc686-70d7-484a-a9b3-afbbefabc85a/} audit_not_compliant: Processed alignments file {ENCFF944RPR|/files/ENCFF944RPR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 23662900 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF936ASR|/files/ENCFF936ASR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 24080132 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR580LZO | float |
Histone_ChIP-seq_ENCSR580LZO |
Histone_ChIP-seq ENCSR580LZO [biosample_summary="Homo sapiens IMR-90" and target="H3K9me1"]
|
 |
[1.58, 18.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 57539749 | 1.79% | 127030 |
| chr1 | 5327911 | 2.14% | 11623 |
| chr2 | 5093456 | 2.10% | 11251 |
| chr3 | 3600809 | 1.82% | 8156 |
| chr4 | 1982403 | 1.04% | 4823 |
| chr5 | 3109218 | 1.71% | 6975 |
| chr6 | 2881564 | 1.69% | 6882 |
| chr7 | 2688403 | 1.69% | 6101 |
| chr8 | 2519410 | 1.74% | 5734 |
| chr9 | 2727520 | 1.97% | 5879 |
| chr10 | 3124987 | 2.34% | 6692 |
| chr11 | 3217927 | 2.38% | 6882 |
| chr12 | 2614741 | 1.96% | 5992 |
| chr13 | 1582614 | 1.38% | 3644 |
| chr14 | 1867048 | 1.74% | 4130 |
| chr15 | 2446659 | 2.40% | 5322 |
| chr16 | 2223975 | 2.46% | 4621 |
| chr17 | 3032374 | 3.64% | 6268 |
| chr18 | 1297836 | 1.61% | 3007 |
| chr19 | 1601103 | 2.73% | 3235 |
| chr20 | 1888826 | 2.93% | 3981 |
| chr21 | 741955 | 1.59% | 1614 |
| chr22 | 1569447 | 3.09% | 3206 |
| chrX | 399563 | 0.26% | 1012 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 127030 | 178 | 4521 | 452.96 | 375 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF262YTC.bed.gz | 2.89 MB | 94e801e7362b39123ce80479c0db488f |
| ENCFF262YTC.tabix.bed.gz | 1.28 MB | f79561b02565ecf803e08abacdbe7d44 |
| ENCFF262YTC.tabix.bed.gz.tbi | 325.08 KB | 7a2651de28311e1fa565ee65c35d934a |
| genomic_resource.yaml | 2.61 KB | 8b6896996a49a67fb59053117bc21ba1 |
| statistics/ |