Resource
| Id | Histone_ChIP-seq/ENCSR580GOD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR580GOD [biosample_summary="Homo sapiens BLaER1 36 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: 36 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR580GOD | float |
Histone_ChIP-seq_ENCSR580GOD |
Histone_ChIP-seq ENCSR580GOD [biosample_summary="Homo sapiens BLaER1 36 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me1"]
|
 |
[1.58, 26.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 250657586 | 7.79% | 217007 |
| chr1 | 24023924 | 9.65% | 20523 |
| chr1_KI270706v1_random | 264 | 0.15% | 1 |
| chr1_KI270710v1_random | 262 | 0.65% | 1 |
| chr1_KI270711v1_random | 315 | 0.75% | 1 |
| chr1_KI270712v1_random | 250 | 0.14% | 1 |
| chr1_KI270713v1_random | 6986 | 17.15% | 9 |
| chr1_KI270714v1_random | 483 | 1.16% | 1 |
| chr2 | 19209528 | 7.93% | 16971 |
| chr3 | 13688456 | 6.90% | 12841 |
| chr3_GL000221v1_random | 3518 | 2.26% | 6 |
| chr4 | 8927260 | 4.69% | 8865 |
| chr4_GL000008v2_random | 727 | 0.35% | 2 |
| chr5 | 11999407 | 6.61% | 10918 |
| chr6 | 12113977 | 7.09% | 11423 |
| chr7 | 12394926 | 7.78% | 11342 |
| chr8 | 11749117 | 8.10% | 9871 |
| chr9 | 10976545 | 7.93% | 9282 |
| chr10 | 12873778 | 9.62% | 11174 |
| chr11 | 12503088 | 9.26% | 10438 |
| chr11_KI270721v1_random | 2104 | 2.10% | 5 |
| chr12 | 11582735 | 8.69% | 10102 |
| chr13 | 5352081 | 4.68% | 5344 |
| chr14 | 8047505 | 7.52% | 6761 |
| chr14_GL000009v2_random | 1400 | 0.69% | 4 |
| chr14_GL000194v1_random | 2188 | 1.14% | 4 |
| chr14_GL000225v1_random | 366 | 0.17% | 1 |
| chr14_KI270722v1_random | 259 | 0.13% | 1 |
| chr14_KI270723v1_random | 1239 | 3.25% | 3 |
| chr14_KI270724v1_random | 397 | 1.00% | 1 |
| chr14_KI270726v1_random | 1498 | 3.42% | 3 |
| chr15 | 8400287 | 8.24% | 7266 |
| chr15_KI270727v1_random | 2160 | 0.48% | 4 |
| chr16 | 11400282 | 12.62% | 8745 |
| chr16_KI270728v1_random | 1464 | 0.08% | 3 |
| chr17 | 14566754 | 17.50% | 10972 |
| chr17_GL000205v2_random | 13650 | 7.35% | 11 |
| chr18 | 4887256 | 6.08% | 4555 |
| chr19 | 11038182 | 18.83% | 8514 |
| chr20 | 8881856 | 13.78% | 7147 |
| chr21 | 3620271 | 7.75% | 2972 |
| chr22 | 7727483 | 15.21% | 5609 |
| chr22_KI270731v1_random | 1693 | 1.12% | 4 |
| chr22_KI270733v1_random | 2991 | 1.66% | 6 |
| chr22_KI270734v1_random | 1562 | 0.95% | 3 |
| chrUn_GL000195v1 | 1869 | 1.02% | 5 |
| chrUn_GL000214v1 | 932 | 0.68% | 2 |
| chrUn_GL000216v2 | 1439 | 0.81% | 1 |
| chrUn_GL000219v1 | 7319 | 4.08% | 12 |
| chrUn_GL000220v1 | 419 | 0.26% | 1 |
| chrUn_GL000224v1 | 1618 | 0.90% | 1 |
| chrUn_KI270438v1 | 408 | 0.36% | 1 |
| chrUn_KI270442v1 | 1306 | 0.33% | 2 |
| chrUn_KI270512v1 | 274 | 1.21% | 1 |
| chrUn_KI270519v1 | 1522 | 1.10% | 3 |
| chrUn_KI270742v1 | 373 | 0.20% | 1 |
| chrUn_KI270744v1 | 7637 | 4.53% | 10 |
| chrUn_KI270751v1 | 1253 | 0.83% | 2 |
| chrUn_KI270753v1 | 2718 | 4.32% | 2 |
| chrX | 4614434 | 2.96% | 5247 |
| chrY | 3591 | 0.01% | 6 |
| 3306 contigs with no values (121921540 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 217007 | 250 | 51088 | 1155.07 | 682 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF719BRB.bed.gz | 4.58 MB | 77ea6b0ddd232ec5f63252f89b32793c |
| ENCFF719BRB.tabix.bed.gz | 2.15 MB | ea3424fd09fecbe73a56222e2105bb4d |
| ENCFF719BRB.tabix.bed.gz.tbi | 415.31 KB | fe6be71206b207ee18b3dbc84cf133d1 |
| genomic_resource.yaml | 3.12 KB | 4cb8dd1c4529303b9d91e356a1ef4f61 |
| statistics/ |