Resource
| Id | Histone_ChIP-seq/ENCSR579TJT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR579TJT [biosample_summary="Homo sapiens IMR-90" and target="H3K79me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN372YYP|/analyses/ENCAN372YYP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN372YYP|/analyses/ENCAN372YYP/} has in progress subobject document {1875fd25-6044-4d7d-863e-3fdb18003444|/documents/1875fd25-6044-4d7d-863e-3fdb18003444/} audit_warning: Processed alignments file {ENCFF770OFN|/files/ENCFF770OFN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13920956 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF848ADK|/files/ENCFF848ADK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13990741 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR579TJT | float |
Histone_ChIP-seq_ENCSR579TJT |
Histone_ChIP-seq ENCSR579TJT [biosample_summary="Homo sapiens IMR-90" and target="H3K79me1"]
|
 |
[1.58, 13.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 68910091 | 2.14% | 131293 |
| chr1 | 6200130 | 2.49% | 11789 |
| chr2 | 5633084 | 2.33% | 10810 |
| chr3 | 4775404 | 2.41% | 9214 |
| chr4 | 2842086 | 1.49% | 5669 |
| chr5 | 3530359 | 1.94% | 6953 |
| chr6 | 3704902 | 2.17% | 7207 |
| chr7 | 3576455 | 2.24% | 6877 |
| chr8 | 2872945 | 1.98% | 5555 |
| chr9 | 3156078 | 2.28% | 5938 |
| chr10 | 3697574 | 2.76% | 6987 |
| chr11 | 3542564 | 2.62% | 6653 |
| chr12 | 3449452 | 2.59% | 6711 |
| chr13 | 2063525 | 1.80% | 4017 |
| chr14 | 2333767 | 2.18% | 4436 |
| chr15 | 2787587 | 2.73% | 5310 |
| chr16 | 2601795 | 2.88% | 4748 |
| chr17 | 3439415 | 4.13% | 6417 |
| chr18 | 1452129 | 1.81% | 2820 |
| chr19 | 2406928 | 4.11% | 4297 |
| chr20 | 2043801 | 3.17% | 3650 |
| chr21 | 724320 | 1.55% | 1380 |
| chr22 | 1667603 | 3.28% | 2958 |
| chrX | 408188 | 0.26% | 897 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 131293 | 183 | 4051 | 524.86 | 447 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF353EDW.bed.gz | 2.85 MB | 80ec52ed83dab61d4f374cc87aa1ea11 |
| ENCFF353EDW.tabix.bed.gz | 1.31 MB | f0050bcb778eea56186b179c671b0742 |
| ENCFF353EDW.tabix.bed.gz.tbi | 199.34 KB | 07db118c9423c09cce33b0163d14208f |
| genomic_resource.yaml | 2.6 KB | a232823406fdd6dfb525252232723228 |
| statistics/ |