Resource

Id Histone_ChIP-seq/ENCSR579OVQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR579OVQ [biosample_summary="Homo sapiens chorionic villus tissue embryo (16 weeks)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR579OVQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007106/
  • biosample_summary: Homo sapiens chorionic villus tissue embryo (16 weeks)
  • date_created: 2017-03-22T16:16:48.993330+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR579OVQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR579OVQ float

Histone_ChIP-seq_ENCSR579OVQ
Histone_ChIP-seq ENCSR579OVQ [biosample_summary="Homo sapiens chorionic villus tissue embryo (16 weeks)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR579OVQ [1.79, 12.1]
n
35,854,006
mean
4.59
sd
1.24

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 358540061.11% 66502
chr1 3842560 1.54% 6961
chr2 2607878 1.08% 5008
chr3 2037725 1.03% 3872
chr4 1154846 0.61% 2323
chr5 1667180 0.92% 3231
chr6 1783249 1.04% 3574
chr7 1762257 1.11% 3381
chr8 1423333 0.98% 2708
chr9 1721306 1.24% 3136
chr10 1688845 1.26% 3127
chr11 2121678 1.57% 3728
chr12 1556172 1.17% 3032
chr13 612841 0.54% 1251
chr14 1283982 1.20% 2268
chr15 1266549 1.24% 2306
chr16 1578017 1.75% 2746
chr17 2136404 2.57% 3659
chr18 530231 0.66% 1109
chr19 2106517 3.59% 3619
chr20 1207771 1.87% 2124
chr21 388483 0.83% 776
chr22 1105293 2.17% 1817
chrX 263823 0.17% 724
chrY 7066 0.01% 22
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66502 155 6097 539.14 449
global segment-length histogram

Files

Filename Size md5
ENCFF884KHT.bed.gz 1.22 MB f50b65490189ad817099f4601cc7adc7
ENCFF884KHT.tabix.bed.gz 644.75 KB feb841084644caa6a67de14ce1fb0e64
ENCFF884KHT.tabix.bed.gz.tbi 240.23 KB 6ea4308124892445c285eeef078e396e
genomic_resource.yaml 1.99 KB 8e9dc9d8f6bd5cc34f9a47099f5fc00d
statistics/