Resource

Id Histone_ChIP-seq/ENCSR577CDWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR577CDW [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR577CDW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000427/
  • biosample_summary: Homo sapiens neurosphere female embryo (17 weeks) originated from cortex
  • date_created: 2015-09-15T20:27:18.701655+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR577CDW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (17 weeks)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR577CDW float

Histone_ChIP-seq_ENCSR577CDW
Histone_ChIP-seq ENCSR577CDW [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from cortex" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR577CDW [1.37, 40.8]
n
47,593,882
mean
5.48
sd
1.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 475938821.48% 108783
chr1 2856989 1.15% 6893
chr1_KI270706v1_random 2790 1.59% 13
chr1_KI270707v1_random 443 1.38% 2
chr1_KI270708v1_random 3199 2.51% 12
chr1_KI270709v1_random 17901 26.77% 34
chr1_KI270710v1_random 781 1.94% 5
chr1_KI270712v1_random 3003 1.71% 8
chr1_KI270713v1_random 1257 3.09% 3
chr2 3160965 1.31% 7513
chr2_KI270716v1_random 4180 2.72% 7
chr3 2473120 1.25% 6334
chr3_GL000221v1_random 503 0.32% 3
chr4 2188919 1.15% 5313
chr4_GL000008v2_random 5343 2.55% 3
chr5 2596532 1.43% 6048
chr5_GL000208v1_random 14927 16.10% 25
chr6 2134931 1.25% 5408
chr7 3373878 2.12% 7352
chr8 2483657 1.71% 5275
chr9 1605653 1.16% 3828
chr9_KI270718v1_random 231 0.61% 1
chr9_KI270719v1_random 8838 5.00% 29
chr9_KI270720v1_random 6549 16.77% 16
chr10 2153251 1.61% 4856
chr11 2127168 1.57% 4865
chr12 2243269 1.68% 4875
chr13 1316861 1.15% 3206
chr14 1412119 1.32% 3349
chr14_GL000009v2_random 9139 4.53% 45
chr14_GL000194v1_random 17398 9.09% 52
chr14_GL000225v1_random 104482 49.48% 96
chr14_KI270722v1_random 29575 15.24% 38
chr14_KI270723v1_random 7986 20.95% 23
chr14_KI270724v1_random 8708 22.01% 20
chr14_KI270725v1_random 3254 1.88% 8
chr15 1275397 1.25% 2897
chr15_KI270727v1_random 187 0.04% 1
chr16 1430697 1.58% 3032
chr16_KI270728v1_random 6504 0.35% 27
chr17 1210274 1.45% 2662
chr17_GL000205v2_random 40653 21.90% 17
chr17_KI270729v1_random 95922 34.16% 93
chr17_KI270730v1_random 23610 20.98% 18
chr18 891231 1.11% 2311
chr19 3895620 6.65% 6817
chr20 1028333 1.60% 2439
chr21 867196 1.86% 1698
chr22 664624 1.31% 1629
chr22_KI270732v1_random 12025 28.95% 24
chr22_KI270733v1_random 9710 5.40% 20
chr22_KI270735v1_random 13942 32.57% 27
chr22_KI270736v1_random 90445 49.72% 148
chr22_KI270737v1_random 1370 1.32% 5
chr22_KI270738v1_random 32461 32.67% 58
chrUn_GL000214v1 4782 3.47% 14
chrUn_GL000216v2 88355 50.03% 76
chrUn_GL000218v1 3877 2.41% 19
chrUn_GL000219v1 10598 5.91% 9
chrUn_GL000220v1 1239 0.77% 6
chrUn_GL000224v1 15592 8.68% 33
chrUn_KI270330v1 216 13.08% 1
chrUn_KI270333v1 147 5.45% 1
chrUn_KI270336v1 164 15.98% 1
chrUn_KI270337v1 347 30.95% 1
chrUn_KI270420v1 263 11.33% 1
chrUn_KI270429v1 761 55.91% 1
chrUn_KI270435v1 15281 16.43% 33
chrUn_KI270438v1 55614 49.43% 66
chrUn_KI270442v1 184905 47.16% 199
chrUn_KI270448v1 4628 57.91% 6
chrUn_KI270465v1 303 17.08% 1
chrUn_KI270466v1 725 58.80% 2
chrUn_KI270467v1 1310 33.42% 2
chrUn_KI270468v1 2333 57.53% 3
chrUn_KI270507v1 3193 59.65% 8
chrUn_KI270508v1 1219 62.48% 3
chrUn_KI270509v1 1631 70.36% 2
chrUn_KI270510v1 493 20.41% 2
chrUn_KI270511v1 2091 25.73% 2
chrUn_KI270512v1 5424 23.91% 10
chrUn_KI270515v1 2099 33.00% 4
chrUn_KI270516v1 865 66.54% 1
chrUn_KI270517v1 1336 41.07% 2
chrUn_KI270518v1 895 40.94% 1
chrUn_KI270519v1 39178 28.36% 74
chrUn_KI270521v1 2041 26.71% 6
chrUn_KI270522v1 2374 41.84% 3
chrUn_KI270538v1 20525 22.48% 30
chrUn_KI270580v1 438 28.20% 1
chrUn_KI270583v1 488 34.86% 1
chrUn_KI270584v1 2394 53.05% 4
chrUn_KI270587v1 1584 53.35% 1
chrUn_KI270588v1 2125 34.51% 5
chrUn_KI270589v1 3610 8.12% 3
chrUn_KI270590v1 2833 60.47% 5
chrUn_KI270591v1 3826 66.01% 5
chrUn_KI270593v1 397 13.05% 1
chrUn_KI270742v1 3688 1.97% 13
chrUn_KI270743v1 1843 0.87% 9
chrUn_KI270744v1 19561 11.61% 43
chrUn_KI270746v1 9451 14.22% 29
chrUn_KI270747v1 413 0.21% 1
chrUn_KI270749v1 5575 3.51% 18
chrUn_KI270750v1 8926 6.00% 19
chrUn_KI270751v1 12800 8.49% 29
chrUn_KI270753v1 209 0.33% 1
chrUn_KI270754v1 983 2.45% 5
chrUn_KI270756v1 9714 12.21% 11
chrUn_KI270757v1 12774 17.93% 18
chrX 2994475 1.92% 8357
chrY 52971 0.09% 100
3255 contigs with no values (119415242 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 108783 135 42613 437.51 314
global segment-length histogram

Files

Filename Size md5
ENCFF292JEH.bed.gz 1.82 MB f938051c80f66442bccdf2ed1bbf1c0c
ENCFF292JEH.tabix.bed.gz 980.8 KB 0a978366e25fd2ada5314f7d17724a5d
ENCFF292JEH.tabix.bed.gz.tbi 369.88 KB 803630397ab510bfb9e3c243d8e44dab
genomic_resource.yaml 2.06 KB 1ab48847c2b05966994a2ccf2fb80f4d
statistics/