Resource

Id Histone_ChIP-seq/ENCSR575SWAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR575SWA [biosample_summary="Homo sapiens lung tissue male child (3 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR575SWA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue male child (3 years)
  • date_created: 2015-10-01T07:16:03.719409+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR575SWA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male child (3 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR575SWA float

Histone_ChIP-seq_ENCSR575SWA
Histone_ChIP-seq ENCSR575SWA [biosample_summary="Homo sapiens lung tissue male child (3 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR575SWA [1.71, 13.7]
n
34,772,661
mean
4.74
sd
1.41

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 347726611.08% 81259
chr1 3488064 1.40% 7974
chr2 3136772 1.30% 7247
chr3 3065218 1.55% 7172
chr4 1766487 0.93% 4434
chr5 2325993 1.28% 5537
chr6 2249934 1.32% 5379
chr7 1674707 1.05% 4118
chr8 1601464 1.10% 3844
chr9 1420044 1.03% 3278
chr10 1925417 1.44% 4473
chr11 1718229 1.27% 3895
chr12 1711423 1.28% 4070
chr13 1049511 0.92% 2543
chr14 1140295 1.07% 2574
chr15 1296012 1.27% 2959
chr16 791248 0.88% 1755
chr17 1121496 1.35% 2468
chr18 760553 0.95% 1873
chr19 532414 0.91% 1122
chr20 846251 1.31% 1804
chr21 283752 0.61% 666
chr22 609219 1.20% 1338
chrUn_GL000195v1 187 0.10% 1
chrUn_GL000219v1 267 0.15% 1
chrX 253700 0.16% 720
chrY 4004 0.01% 14
3340 contigs with no values (128714991 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 81259 155 3818 427.92 358
global segment-length histogram

Files

Filename Size md5
ENCFF499CGW.bed.gz 1.57 MB e7a5d4c49cc2a873887a1bb5f2f7b149
ENCFF499CGW.tabix.bed.gz 787.93 KB add3bd276ce9015aa9f257ece7fefe42
ENCFF499CGW.tabix.bed.gz.tbi 249.89 KB 3cef11ea3ae6579acbe6c1ae471cbc35
genomic_resource.yaml 1.96 KB b8f498750ca16b0ab4978d847a7cbfc4
statistics/