Resource

Id Histone_ChIP-seq/ENCSR571RCHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR571RCH [biosample_summary="Homo sapiens pancreas tissue female adult (61 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR571RCH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001264/
  • biosample_summary: Homo sapiens pancreas tissue female adult (61 years)
  • date_created: 2021-01-28T22:02:01.191481+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR571RCH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (61 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR571RCH float

Histone_ChIP-seq_ENCSR571RCH
Histone_ChIP-seq ENCSR571RCH [biosample_summary="Homo sapiens pancreas tissue female adult (61 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR571RCH [1.6, 8.01]
n
51,155,906
mean
3.55
sd
0.834

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 511559061.59% 54964
chr1 5341356 2.15% 5561
chr2 4380704 1.81% 4723
chr3 3638102 1.83% 3957
chr4 2676587 1.41% 2993
chr5 2884229 1.59% 3132
chr6 3114748 1.82% 3509
chr7 2642095 1.66% 2895
chr8 2418348 1.67% 2600
chr9 2284354 1.65% 2349
chr10 2658118 1.99% 2875
chr11 2527880 1.87% 2728
chr12 2498538 1.87% 2749
chr13 1480082 1.29% 1573
chr14 1917671 1.79% 1958
chr15 1826951 1.79% 1868
chr16 1529010 1.69% 1650
chr17 2173364 2.61% 2259
chr18 1073642 1.34% 1159
chr19 1090087 1.86% 1201
chr20 1233490 1.91% 1281
chr21 498565 1.07% 570
chr22 942325 1.85% 929
chrX 325660 0.21% 445
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54964 225 11555 930.72 755
global segment-length histogram

Files

Filename Size md5
ENCFF838GPM.bed.gz 1.12 MB 9bc41880cbb8df2d24518ee5f14ca97d
ENCFF838GPM.tabix.bed.gz 574.34 KB 08ecaa5242cdd82811e4ab8bc0fd35a7
ENCFF838GPM.tabix.bed.gz.tbi 220.83 KB baf9183b827b95256bfdfc44784cf30d
genomic_resource.yaml 1.5 KB 6ef659dd2a29de0f1f14e1e2e98fc3f0
statistics/