Resource

Id Histone_ChIP-seq/ENCSR566ZFQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR566ZFQ [biosample_summary="Homo sapiens placental basal plate tissue female embryo (40 weeks)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR566ZFQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0003013/
  • biosample_summary: Homo sapiens placental basal plate tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:17:01.344068+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR566ZFQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR566ZFQ float

Histone_ChIP-seq_ENCSR566ZFQ
Histone_ChIP-seq ENCSR566ZFQ [biosample_summary="Homo sapiens placental basal plate tissue female embryo (40 weeks)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR566ZFQ [2.14, 31.7]
n
7,152,187
mean
3.93
sd
0.896

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 71521870.22% 23452
chr1 244206 0.10% 845
chr2 487094 0.20% 1666
chr3 333621 0.17% 1181
chr4 482349 0.25% 1628
chr5 485480 0.27% 1550
chr6 249690 0.15% 868
chr7 474941 0.30% 1484
chr8 470191 0.32% 1549
chr9 238853 0.17% 780
chr10 298672 0.22% 993
chr11 314639 0.23% 1061
chr12 334205 0.25% 1045
chr13 412155 0.36% 1377
chr14 247286 0.23% 841
chr15 175661 0.17% 528
chr16 260923 0.29% 835
chr17 129951 0.16% 427
chr18 248315 0.31% 829
chr19 367175 0.63% 996
chr20 125631 0.19% 422
chr21 217770 0.47% 651
chr22 102453 0.20% 317
chrX 450926 0.29% 1579
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 23452 150 2998 304.97 267
global segment-length histogram

Files

Filename Size md5
ENCFF687XMX.bed.gz 395.42 KB cce0b4acb222ed3a3f8f250f4fad3ce6
ENCFF687XMX.tabix.bed.gz 215.37 KB 7645bf7b0ff4629f918ca9e89c8de086
ENCFF687XMX.tabix.bed.gz.tbi 154.8 KB a967343b0da64d785dce98e02d46997f
genomic_resource.yaml 1.55 KB 5701c0f3e867ffa7600069a4f089c839
statistics/